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Role of the line probe assay INNO-LiPA HBV DR and ultradeep pyrosequencing in detecting resistance mutations to nucleoside/nucleotide analogues in viral samples isolated from chronic hepatitis B patients.  Mese S, Arikan M, Cakiris A, Abaci N, Gumus E, Kursun O, Onel D, Ustek D, Kaymakoglu S, Badur S, Yenen OS, Bozkaya E. (2013) J Gen Virology ePub:
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Role of Bacterial Communities in the Natural Suppression of Rhizoctonia solani Bare Patch Disease of Wheat (Triticum aestivum L.).  Yin C, Hulbert SH, Schroeder KL, Mavrodi O, Mavrodi D, Dhingra A, Schillinger WF, Paulitz TC. (2013) Appl Environ Microbiol 79(23): 7428-38.
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Complexity, temporal stability, and clinical correlates of airway bacterial community composition in primary ciliary dyskinesia.  Rogers GB, Carroll MP, Zain NM, Bruce KD, Lock K, Walker W, Jones G, Daniels TW, Lucas JS. (2013) J Clin Microbiol 51(12): 4029-35.
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Comparison of next-generation sequencing and clone-based sequencing in analysis of hepatitis B virus reverse transcriptase quasispecies heterogeneity.  Gong L, Han Y, Chen L, Liu F, Hao P, Sheng J, Li XH, Yu DM, Gong QM, Tian F, Guo XK, Zhang XX. (2013) J Clin Microbiol 51(12): 4087-94.
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Microbial Ecology Dynamics during Rye and Wheat Sourdough Preparation.  Ercolini D, Pontonio E, De Filippis F, Minervini F, La Storia A, Gobbetti M, Di Cagno R. (2013) Appl Environ Microbiol 79(24): 7827-36.
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Amplikyzer: Automated methylation analysis of amplicons from bisulfite flowgram sequencing  Sven Rahmann; Jasmin Beygo; Deniz Kanber;Marcel Martin;Bernhard Horsthemke;Karin Buiting (2013) PeerJ PrePrints 1: e122v2
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The Origin of the RB1 Imprint  Deniz Kanber Karin Buiting Christian Roos Jörg Gromoll Sabine Kaya Bernhard Horsthemke Dietmar Lohmann (2013) PLOS one 8 (11): e81502
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Microbial community changes in hydraulic fracturing fluids and produced water from shale gas extraction.  Murali Mohan A, Hartsock A, Bibby KJ, Hammack RW, Vidic RD, Gregory KB. (2013) Environ Sci Technol 47(22): 13141-50.
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Full-length novel MHC class I allele discovery by next-generation sequencing: two platforms are better than one  Dudley DM, Karl JA, Creager HM, Bohn PS, Wiseman RW, O'Connor DH. (2013) Immunogenetics ePub:
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The Gut Microbiotassay: a high-throughput qPCR approach combinable with next generation sequencing to study gut microbial diversity.  Hermann-Bank ML, Skovgaard K, Stockmarr A, Larsen N, Mřlbak L. (2013) BMC Genomics 14(1): 788.
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Transcriptome sequencing and microarray design for functional genomics in the extremophile Arabidopsis relative Thellungiella salsuginea (Eutrema salsugineum).  Lee YP, Giorgi FM, Lohse M, Kvederaviciute K, Klages S, Usadel B, Meskiene I, Reinhardt R, Hincha DK. (2013) BMC Genomics 14(1): 793.
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Disturbance induced decoupling between host genetics and composition of the associated microbiome.  Wegner KM, Volkenborn N, Peter H, Eiler A. (2013) BMC Microbiol 13(1): 252.
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IgG variable region and VH CDR3 diversity in unimmunized mice analyzed by massively parallel sequencing.  Lu J, Panavas T, Thys K, Aerssens J, Naso M, Fisher J, Rycyzyn M, Sweet RW. (2013) Mol Immunol 57(2): 272-283.
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Next generation sequencing reveals the hidden diversity of zooplankton assemblages.  Lindeque PK, Parry HE, Harmer RA, Somerfield PJ, Atkinson A. (2013) PLoS One 8(11): e81327.
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Autologous antibody capture to enrich immunogenic viruses for viral discovery.  Oude Munnink BB, Jazaeri Farsani SM, Deijs M, Jonkers J, Verhoeven JT, Ieven M, Goossens H, de Jong MD, Berkhout B, Loens K, Kellam P, Bakker M, Canuti M, Cotten M, van der Hoek L. (2013) PLoS One 8(11): e78454.
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Differences in asthma genetics between Chinese and other populations.  Leung TF, Ko FW, Sy HY, Tsui SK, Wong GW. (2013) J Allergy Clin Immunol ePub:
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Simultaneous pyrosequencing of the 16S rRNA, IncP-1 trfA, and merA genes.  Holmsgaard PN, Sřrensen SJ, Hansen LH. (2013) J Microbiol Methods 95(2): 280-4.
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Novel cases of D-2-hydroxyglutaric aciduria with IDH1 or IDH2 mosaic mutations identified by amplicon deep sequencing.  Nota B, Hamilton EM, Sie D, Ozturk S, van Dooren SJ, Ojeda MR, Jakobs C, Christensen E, Kirk EP, Sykut-Cegielska J, Lund AM, van der Knaap MS, Salomons GS. (2013) J Med Genet 50(11): 754-9.
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Pyrosequencing analysis of microbiota in kaburazushi, a traditional medieval sushi in Japan.  Koyanagi T, Nakagawa A, Kiyohara M, Matsui H, Yamamoto K, Barla F, Take H, Katsuyama Y, Tsuji A, Shijimaya M, Nakamura S, Minami H, Enomoto T, Katayama T, Kumagai H. (2013) Biosci Biotechnol Biochem 77(10): 2125-30.
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Microbial community analysis of Deepwater Horizon oil-spill impacted sites along the Gulf coast using functional and phylogenetic markers.  Looper JK, Cotto A, Kim BY, Lee MK, Liles MR, Ní Chadhain SM, Son A. (2013) Environ Sci Process Impacts 15(11): 2068-79.
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Cultivation and Complete Genome Sequencing of Gloeobacter kilaueensis sp. nov., from a Lava Cave in Kîlauea Caldera, Hawai'i.  Saw JH, Schatz M, Brown MV, Kunkel DD, Foster JS, Shick H, Christensen S, Hou S, Wan X, Donachie SP. (2013) PLoS One 8(10): e76376.
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Identification of Novel Viruses Using VirusHunter -- an Automated Data Analysis Pipeline.  Zhao G, Krishnamurthy S, Cai Z, Popov VL, Travassos da Rosa AP, Guzman H, Cao S, Virgin HW, Tesh RB, Wang D. (2013) PLoS One 8(10): e78470.
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Targeted cancer exome sequencing reveals recurrent mutations in myeloproliferative neoplasms.  Tenedini E, Bernardis I, Artusi V, Artuso L, Roncaglia E, Guglielmelli P, Pieri L, Bogani C, Biamonte F, Rotunno G, Mannarelli C, Bianchi E, Pancrazzi A, Fanelli T, Tagliazucchi GM, Ferrari S, Manfredini R, Vannucchi AM, Tagliafico E. (2013) Leukemia ePub:
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Fecal protease activity is associated with compositional alterations in the intestinal microbiota.  Carroll IM, Ringel-Kulka T, Ferrier L, Wu MC, Siddle JP, Bueno L, Ringel Y. (2013) PLoS One 8(10): e78017.
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Identification of host and viral factors involved in a dissimilar resolution of a hepatitis C virus infection.  Cubero M, Gregori J, Esteban JI, García-Cehic D, Bes M, Perales C, Domingo E, Rodríguez-Frías F, Sauleda S, Casillas R, Sanchez A, Ortega I, Esteban R, Guardia J, Quer J. (2013) Liver Int ePub:
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Microbial community in the soil determines the forest recovery post-exposure to gamma irradiation.  Shah V, Shah S, Mackey H, Kambhampati M, Collins D, Dowd SE, Colichio R, McDonnell KT, Green T. (2013) Environ Sci Technol 47(20): 11396-402.
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Sterile paper points as a bacterial DNA-contamination source in microbiome profiles of clinical samples.  van der Horst J, Buijs MJ, Laine ML, Wismeijer D, Loos BG, Crielaard W, Zaura E. (2013) J Dent ePub:
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Characterization of the heart transcriptome of the white shark (Carcharodon carcharias).  Richards VP, Suzuki H, Stanhope MJ, Shivji MS. (2013) BMC Genomics 14(1): 697.
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Characterization and analysis of a transcriptome from the boreal spider crab Hyas araneus.  Harms L, Frickenhaus S, Schiffer M, Mark FC, Storch D, Pörtner HO, Held C, Lucassen M. (2013) Comp Biochem Physiol Part D Genomics Proteomics 8(4): 344-351.
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Caecal fermentation, putrefaction and microbiotas in rats fed milk casein, soy protein or fish meal.  An C, Kuda T, Yazaki T, Takahashi H, Kimura B. (2013) Appl Microbiol Biotechnol ePub:
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Deep bisulfite sequencing of aberrantly methylated Loci in a patient with multiple methylation defects.  Beygo J, Ammerpohl O, Gritzan D, Heitmann M, Rademacher K, Richter J, Caliebe A, Siebert R, Horsthemke B, Buiting K. (2013) PLoS One 8(10): e76953.
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BAC-Pool Sequencing and Analysis of Large Segments of A12 and D12 Homoeologous Chromosomes in Upland Cotton.  Buyyarapu R, Kantety RV, Yu JZ, Xu Z, Kohel RJ, Percy RG, Macmil S, Wiley GB, Roe BA, Sharma GC. (2013) PLoS One 8(10): e76757.
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The repetitive component of the sunflower genome as shown by different procedures for assembling next generation sequencing reads.  Natali L, Cossu RM, Barghini E, Giordani T, Buti M, Mascagni F, Morgante M, Gill N, Kane NC, Rieseberg L, Cavallini A. (2013) BMC Genomics 14(1): 686.
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Improved Detection of Rare HIV-1 Variants using 454 Pyrosequencing.  Larsen BB, Chen L, Maust BS, Kim M, Zhao H, Deng W, Westfall D, Beck I, Frenkel LM, Mullins JI. (2013) PLoS One 8(10): e76502.
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Headwaters are critical reservoirs of microbial diversity for fluvial networks.  Besemer K, Singer G, Quince C, Bertuzzo E, Sloan W, Battin TJ. (2013) Proc Biol Sci 280(1771): 20131760.
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Winter-Summer Succession of Unicellular Eukaryotes in a Meso-eutrophic Coastal System.  Christaki U, Kormas KA, Genitsaris S, Georges C, Sime-Ngando T, Viscogliosi E, Monchy S. (2013) Microb Ecol ePub:
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Temporal bacterial community dynamics vary among ulcerative colitis patients after fecal microbiota transplantation.  Angelberger S, Reinisch W, Makristathis A, Lichtenberger C, Dejaco C, Papay P, Novacek G, Trauner M, Loy A, Berry D. (2013) Am J Gastroenterol 108(10): 1620-30.
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Next-Generation Survey Sequencing and the Molecular Organization of Wheat Chromosome 6B.  Tanaka T, Kobayashi F, Joshi GP, Onuki R, Sakai H, Kanamori H, Wu J, Simková H, Nasuda S, Endo TR, Hayakawa K, Dolezel J, Ogihara Y, Itoh T, Matsumoto T, Handa H. (2013) DNA Research ePub:
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Construction and characterization of normalized cDNA libraries by 454 pyrosequencing and estimation of DNA methylation levels in three distantly related termite species.  Hayashi Y, Shigenobu S, Watanabe D, Toga K, Saiki R, Shimada K, Bourguignon T, Lo N, Hojo M, Maekawa K, Miura T. (2013) PLoS One 8(9): e76678.
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Changes in the Soil Bacterial Communities in a Cedar Plantation Invaded by Moso Bamboo.  Lin YT, Tang SL, Pai CW, Whitman WB, Coleman DC, Chiu CY. (2013) Microb Ecol ePub:
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The potential of metatranscriptomics for identifying screening targets for bacterial vaginosis.  Twin J, Bradshaw CS, Garland SM, Fairley CK, Fethers K, Tabrizi SN. (2013) PLoS One 8(9): e76892.
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Ascitic microbiota composition is correlated with clinical severity in cirrhosis with portal hypertension.  Rogers GB, van der Gast CJ, Bruce KD, Marsh P, Collins JE, Sutton J, Wright M. (2013) PLoS One 8(9): e74884.
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Characterization of the gut-associated microbiome in inflammatory pouch complications following ileal pouch-anal anastomosis.  Tyler AD, Knox N, Kabakchiev B, Milgrom R, Kirsch R, Cohen Z, McLeod RS, Guttman DS, Krause DO, Silverberg MS. (2013) PLoS One 8(9): e66934.
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No human virus sequences detected by next generation sequencing in benign verrucous skin tumors occurring in BRAF inhibitor treated patients.  Ganzenmueller T, Hage E, Yakushko Y, Kluba J, Woltemate S, Schacht V, Schulz TF, Gutzmer R. (2013) Exp Dermatol ePub:
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Analysis of the factors affecting the formation of the microbiome associated with chronic osteomyelitis of the jaw.  Goda A, Maruyama F, Michi Y, Nakagawa I, Harada K. (2013) Clin Microbiol Infect ePub:
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Unveiling abundance and distribution of planktonic Bacteria and Archaea in a polynya in Amundsen Sea, Antarctica.  Kim JG, Park SJ, Quan ZX, Jung MY, Cha IT, Kim SJ, Kim KH, Yang EJ, Kim YN, Lee SH, Rhee SK. (2013) Environ Microbiol ePub:
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The complete mitochondrial genome of the stonefly Dinocras cephalotes (Plecoptera, Perlidae).  Elbrecht V, Poettker L, John U, Leese F. (2013) Mitochondrial DNA ePub:
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Bacterial diversity associated with the tunic of the model chordate Ciona intestinalis.  Blasiak LC, Zinder SH, Buckley DH, Hill RT. (2013) ISME Journal ePub:
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Next-Generation Sequencing of HIV-1 RNA Genomes: Determination of Error Rates and Minimizing Artificial Recombination.  Di Giallonardo F, Zagordi O, Duport Y, Leemann C, Joos B, Künzli-Gontarczyk M, Bruggmann R, Beerenwinkel N, Günthard HF, Metzner KJ. (2013) PLoS One 8(9): e74249
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Overfeeding and genetics affect the composition of intestinal microbiota in Anas platyrhynchos (Pekin) and Cairina moschata (Muscovy) ducks.  Vasaď F, Brugirard Ricaud K, Bernadet MD, Cauquil L, Bouchez O, Combes S, Davail S. (2013) FEMS Microbiol Ecol ePub:
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Transcriptomic messiness in the venom duct of Conus miles contributes to conotoxin diversity.  Jin AH, Dutertre S, Kaas Q, Lavergne V, Kubala P, Lewis RJ, Alewood PF. (2013) Mol Cell Proteomics ePub:
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Transcriptome dynamics during fibre development in contrasting genotypes of Gossypium hirsutum L.  Nigam D, Kavita P, Tripathi RK, Ranjan A, Goel R, Asif M, Shukla A, Singh G, Rana D, Sawant SV. (2013) Plant Biotechnol J ePub:
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Bacterial community development in experimental gingivitis.  Kistler JO, Booth V, Bradshaw DJ, Wade WG. (2013) PLoS One 8(8): e71227.
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Operational aspects, pH transition and microbial shifts of a H2S desulfurizing biotrickling filter with random packing material.  Montebello AM, Bezerra T, Rovira R, Rago L, Lafuente J, Gamisans X, Campoy S, Baeza M, Gabriel D. (2013) Chemosphere ePub:
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Temporal Dynamics of Abundance and Composition of Nitrogen-Fixing Communities across Agricultural Soils.  Pereira E Silva MC, Schloter-Hai B, Schloter M, van Elsas JD, Salles JF. (2013) PLoS One 8(9): e74500.
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Investigation of the koala (Phascolarctos cinereus) hindgut microbiome via 16S pyrosequencing.  Barker CJ, Gillett A, Polkinghorne A, Timms P. (2013) Vet Microbiol ePub:
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Parallel evolution of genome structure and transcriptional landscape in the Epsilonproteobacteria.  Porcelli I, Reuter M, Pearson BM, Wilhelm T, van Vliet AH. (2013) BMC Genomics 14(1): 616.
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Reduced Colonic Microbial Diversity is Associated with Colitis in NHE3-deficient mice.  Larmonier CB, Laubitz D, Hill FM, Shehab KW, Lipinski L, Midura-Kiela MT, McFadden RM, Ramalingam R, Hassan KA, Golebiewski M, Besselsen DG, Ghishan FK, Kiela PR. (2013) Am J Physiol Gastrointest Liver Physiol ePub:
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Effect of DNA extraction methods and sampling techniques on the apparent structure of cow and sheep rumen microbial communities.  Henderson G, Cox F, Kittelmann S, Miri VH, Zethof M, Noel SJ, Waghorn GC, Janssen PH. (2013) PLoS One 8(9): e74787.
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Effects of dietary cooked navy bean on the fecal microbiome of healthy companion dogs.  Kerr KR, Forster G, Dowd SE, Ryan EP, Swanson KS. (2013) PLoS One 8(9): e74998.
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Transcriptome analysis of two buffalograss cultivars.  Wachholtz M, Heng-Moss T, Twigg P, Baird L, Lu G, Amundsen K. (2013) BMC Genomics 14(1): 613.
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Yellowstone lake nanoarchaeota.  Clingenpeel S, Kan J, Macur RE, Woyke T, Lovalvo D, Varley J, Inskeep WP, Nealson K, McDermott TR. (2013) Front Microbiol 47(10): 274.
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Litter quality versus soil microbial community controls over decomposition: a quantitative analysis.  Cleveland CC, Reed SC, Keller AB, Nemergut DR, O'Neill SP, Ostertag R, Vitousek PM. (2013) Oecologia ePub:
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Temporal changes in particle-associated microbial communities after interception by non-lethal sediment traps.  Lecleir GR, Debruyn JM, Maas EW, Boyd PW, Wilhelm SW. (2013) FEMS Microbiol Ecol ePub:
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Resequencing of Treponema pallidum ssp. pallidum Strains Nichols and SS14: Correction of Sequencing Errors Resulted in Increased Separation of Syphilis Treponeme Subclusters.  Pětrošová H, Pospíšilová P, Strouhal M, Cejková D, Zobaníková M, Mikalová L, Sodergren E, Weinstock GM, Smajs D. (2013) PLoS One 8(9): e74319.
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Characterization of the IncA/C plasmid pSCEC2 from Escherichia coli of swine origin that harbours the multiresistance gene cfr.  Zhang WJ, Xu XR, Schwarz S, Wang XM, Dai L, Zheng HJ, Liu S. (2013) J Antimicrob Chemother ePub:
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Dysbiosis of Salivary Microbiota in Inflammatory Bowel Disease and Its Association With Oral Immunological Biomarkers.  Said HS, Suda W, Nakagome S, Chinen H, Oshima K, Kim S, Kimura R, Iraha A, Ishida H, Fujita J, Mano S, Morita H, Dohi T, Oota H, Hattori M. (2013) DNA Research ePub:
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Characterization of the bacterial community of the chemically defended Hawaiian sacoglossan Elysia rufescens.  Davis J, Fricke WF, Hamann MT, Esquenazi E, Dorrestein PC, Hill RT. (2013) Appl Environ Microbiol ePub:
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A single betaproteobacterium dominates the microbial community of the crambescidine-containing sponge Crambe crambe.  Croué J, West NJ, Escande ML, Intertaglia L, Lebaron P, Suzuki MT. (2013) Sci Rep 3: 2583.
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Distinct antimicrobial peptide expression determines host species-specific bacterial associations.  Franzenburg S, Walter J, Künzel S, Wang J, Baines JF, Bosch TC, Fraune S. (2013) PNAS ePub:
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Human PPP1R26P1 Functions as cis-Repressive Element in Mouse Rb1.  Steenpass L, Kanber D, Hiber M, Buiting K, Horsthemke B, Lohmann D. (2013) PLoS One 8(9): e74159.
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Discovery of a divergent HPIV4 from respiratory secretions using second and third generation metagenomic sequencing.  Alquezar-Planas DE, Mourier T, Bruhn CA, Hansen AJ, Vitcetz SN, Mřrk S, Gorodkin J, Nielsen HA, Guo Y, Sethuraman A, Paxinos EE, Shan T, Delwart EL, Nielsen LP. (2013) Sci Rep 3: 2468.
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IMGT/HighV QUEST paradigm for T cell receptor IMGT clonotype diversity and next generation repertoire immunoprofiling.  Li S, Lefranc MP, Miles JJ, Alamyar E, Giudicelli V, Duroux P, Freeman JD, Corbin VD, Scheerlinck JP, Frohman MA, Cameron PU, Plebanski M, Loveland B, Burrows SR, Papenfuss AT, Gowans EJ. (2013) Nat Commun 47(10): 2333.
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Biogeography of Deep-Sea Benthic Bacteria at Regional Scale (LTER HAUSGARTEN, Fram Strait, Arctic).  Jacob M, Soltwedel T, Boetius A, Ramette A. (2013) PLoS One 8(9): e72779.
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Microbial analysis in primary and persistent endodontic infections by using pyrosequencing.  Hong BY, Lee TK, Lim SM, Chang SW, Park J, Han SH, Zhu Q, Safavi KE, Fouad AF, Kum KY. (2013) J Endod 39(9): 1136-40.
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Use of staged molecular analysis to determine causes of unexplained central nervous system infections.  Hsu CC, Tokarz R, Briese T, Tsai HC, Quan PL, Lipkin WI. (2013) Emerg Infect Dis 19(9): 1470-7.
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Seasonally variable intestinal metagenomes of the red palm weevil (Rhynchophorus ferrugineus).  Jia S, Zhang X, Zhang G, Yin A, Zhang S, Li F, Wang L, Zhao D, Yun Q, Tala, Wang J, Sun G, Baabdullah M, Yu X, Hu S, Al-Mssallem IS, Yu J. (2013) Environ Microbiol ePub:
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Impact of land use on arbuscular mycorrhizal fungal communities in rural Canada.  Dai M, Bainard LD, Hamel C, Gan Y, Lynch D. (2013) Appl Environ Microbiol ePub:
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Microbial community structure of a pilot-scale thermophilic anaerobic digester treating poultry litter.  Smith AM, Sharma D, Lappin-Scott H, Burton S, Huber DH. (2013) Appl Microbiol Biotechnol ePub:
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Development of the preterm gut microbiome in twins at risk of necrotising enterocolitis and sepsis.  Stewart CJ, Marrs EC, Nelson A, Lanyon C, Perry JD, Embleton ND, Cummings SP, Berrington JE. (2013) PLoS One 8(8): e73465.
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Impact of ileocecal resection and concomitant antibiotics on the microbiome of the murine jejunum and colon.  Devine AA, Gonzalez A, Speck KE, Knight R, Helmrath M, Lund PK, Azcarate-Peril MA. (2013) PLoS One 8(8): e73140.
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Improved inference of taxonomic richness from environmental DNA.  Morgan MJ, Chariton AA, Hartley DM, Court LN, Hardy CM. (2013) PLoS One 8(8): e71974.
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Evidence that Microbial translocation occurs in HIV-infected children in the United Kingdom.  Fitzgerald F, Harris K, Doyle R, Alber D, Klein N. (2013) AIDS Res Hum Retroviruses ePub:
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Streptomycin application has no detectable effect on bacterial community structure in apple orchard soil.  Shade A, Klimowicz AK, Spear RN, Linske M, Donato JJ, Hogan CS, McManus PS, Handelsman J. (2013) Appl Environ Microbiol ePub:
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Vertical mother-neonate transfer of maternal gut bacteria via breastfeeding.  Jost T, Lacroix C, Braegger CP, Rochat F, Chassard C. (2013) Environ Microbiol ePub:
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Substantial compositional turnover of fungal communities in an alpine ridge-to-snowbed gradient.  Yao F, Vik U, Brysting AK, Carlsen T, Halvorsen R, Kauserud H. (2013) Mol Ecol ePub:
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De novo Ixodes ricinus salivary gland transcriptome analysis using two next-generation sequencing methodologies.  Schwarz A, von Reumont BM, Erhart J, Chagas AC, Ribeiro JM, Kotsyfakis M. (2013) FASEB J ePub:
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Specificity and transcriptional activity of microbiota associated with low and high microbial abundance sponges from the Red Sea.  Moitinho-Silva L, Bayer K, Cannistraci CV, Giles EC, Ryu T, Seridi L, Ravasi T, Hentschel U. (2013) Mol Ecol ePub:
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Genomics of Compositae crops: reference transcriptome assemblies and evidence of hybridization with wild relatives.  Hodgins KA, Lai Z, Oliveira LO, Still DW, Scascitelli M, Barker MS, Kane NC, Dempewolf H, Kozik A, Kesseli RV, Burke JM, Michelmore RW, Rieseberg LH. (2013) Mol Ecol Resour ePub:
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Minimization of chloroplast contamination in 16S rRNA gene pyrosequencing of insect herbivore bacterial communities.  Hanshew AS, Mason CJ, Raffa KF, Currie CR. (2013) J Microbiol Methods 95(2): 149-155.
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Fungi of the Murine Gut: Episodic Variation and Proliferation during Antibiotic Treatment.  Dollive S, Chen YY, Grunberg S, Bittinger K, Hoffmann C, Vandivier L, Cuff C, Lewis JD, Wu GD, Bushman FD. (2013) PLoS One 8(8): e71806.
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New insights into hydrothermal vent processes in the unique shallow-submarine arc-volcano, Kolumbo (Santorini), Greece.  Kilias SP, Nomikou P, Papanikolaou D, Polymenakou PN, Godelitsas A, Argyraki A, Carey S, Gamaletsos P, Mertzimekis TJ, Stathopoulou E, Goettlicher J, Steininger R, Betzelou K, Livanos I, Christakis C, Bell KC, Scoullos M.  (2013) Sci Rep 3: 2421.
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TP53 mutations are common in all subtypes of epithelial ovarian cancer and occur concomitantly with KRAS mutations in the mucinous type.  Rechsteiner M, Zimmermann AK, Wild PJ, Caduff R, von Teichman A, Fink D, Moch H, Noske A. (2013) Exp Mol Pathol ePub:
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Quasispecies Analysis of JC Virus DNA Present in Urine of Healthy Subjects.  Van Loy T, Thys K, Tritsmans L, Stuyver LJ. (2013) PLoS One 8(8): e70950.
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Metaproteomics of cellulose methanisation under thermophilic conditions reveals a surprisingly high proteolytic activity.  Lü F, Bize A, Guillot A, Monnet V, Madigou C, Chapleur O, Mazéas L, He P, Bouchez T. (2013) ISME Journal ePub:
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Potential role of viruses in white plague coral disease.  Soffer N, Brandt ME, Correa AM, Smith TB, Thurber RV. (2013) ISME Journal ePub:
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The human urinary microbiome; bacterial DNA in voided urine of asymptomatic adults.  Lewis DA, Brown R, Williams J, White P, Jacobson SK, Marchesi JR, Drake MJ. (2013) Front Cell Infect Microbiol 3: 41.
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Metagenomic Analysis of Fungal Communities Inhabiting the Fairy Ring Zone of Tricholoma matsutake.  Kim M, Yoon H, You YH, Kim YE, Woo JR, Seo Y, Lee GM, Kim YJ, Kong WS, Kim JG. (2013) J Microbiol Biotechnol ePub:
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Deep Sequencing Analysis of the Association between the Quasispecies Nature of the Hepatitis C Virus Core Region And Disease Progression.  Miura M, Maekawa S, Takano S, Komatsu N, Tatsumi A, Asakawa Y, Shindo K, Amemiya F, Nakayama Y, Inoue T, Sakamoto M, Yamashita A, Moriishi K, Enomoto N.  (2013) J Virol ePub:
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Alteration of Digestive Tract Microbiome in Neo-natal Holstein Bull Calves by Bacitracin Methylene Diasalicylate Treatment and Scours.  Xie G, Duff GC, Hall LW, Allen JD, Burrows CD, Bernal-Rigoli JC, Dowd SE, Guerriero V, Yeoman CJ.  (2013) J Animal Sci ePub:
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In Vitro Characterization of GSK5852, a Novel HCV Polymerase Inhibitor.  Voitenleitner C, Crosby R, Walker J, Remlinger K, Vamathevan J, Wang A, You S, Johnson J 3rd, Woldu E, Van Horn S, Horton J, Creech K, Shotwell JB, Hong Z, Hamatake R.  (2013) Antimicrob Agents Chemother ePub:
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Solanum torvum responses to the root-knot nematode Meloidogyne incognita.  Bagnaresi P, Sala T, Irdani T, Scotto C, Lamontanara A, Beretta M, Rotino GL, Sestili S, Cattivelli L, Sabatini E.  (2013) BMC Genomics 14: 540.
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Microbial Flora of Cochlear Implants by Gene Pyrosequencing.  Antonelli PJ, Ojano-Dirain CP.  (2013) Otol Neurotol ePub:
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Inter- and Intra-Host Viral Diversity in a Large Seasonal DENV2 Outbreak.  Romano CM, Lauck M, Salvador FS, Lima CR, Villas-Boas LS, Araújo ES, Levi JE, Pannuti CS, O'Connor D, Kallas EG.  (2013) PLoS One 8(8): e70318.
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SNP Discovery in European Anchovy (Engraulis encrasicolus, L) by High-Throughput Transcriptome and Genome Sequencing.  Montes I, Conklin D, Albaina A, Creer S, Carvalho GR, Santos M, Estonba A.  (2013) PLoS One 8(8): e70051.
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HIV-1 Tropism Testing in Subjects Achieving Undetectable HIV-1 RNA: Diagnostic Accuracy, Viral Evolution and Compartmentalization.  Pou C, Codońer FM, Thielen A, Bellido R, Pérez-Álvarez S, Cabrera C, Dalmau J, Curriu M, Lie Y, Noguera-Julian M, Puig J, Martínez-Picado J, Blanco J, Coakley E, Däumer M, Clotet B, Paredes R. (2013) PLoS One 8(8): e67085.
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Alteration of Intestinal Dysbiosis by Fecal Microbiota Transplantation Does not Induce Remission in Patients with Chronic Active Ulcerative Colitis.  Kump PK, Gröchenig HP, Lackner S, Trajanoski S, Reicht G, Hoffmann KM, Deutschmann A, Wenzl HH, Petritsch W, Krejs GJ, Gorkiewicz G, Högenauer C.  (2013) Inflamm Bowel Dis ePub:
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Detection of Low-Frequency HIV-1 RT Drug Resistance Mutations by Ultra-Deep Sequencing in Naďve HIV-1 Infected individuals.  Fleury HJ, Bellecave P, Recordon-Pinson P, Papuchon J, Vandenhende MA, Reigadas S, Tauzin B.  (2013) AIDS Res Hum Retroviruses ePub:
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Deep sequencing analysis of HCV NS3 resistance-associated variants and mutation linkage in liver transplant recipients.  Kirst ME, Li EC, Wang CX, Dong HJ, Liu C, Fried MW, Nelson DR, Wang GP.  (2013) PLoS One 8(7): e69698.
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Genomic evolution and transmission of Helicobacter pylori in two South African families.  Didelot X, Nell S, Yang I, Woltemate S, van der Merwe S, Suerbaum S. (2013) PNAS ePub:
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Transcriptome of Atlantic Cod (Gadus morhua L.) Early Embryos from Farmed and Wild Broodstocks.  Lanes CF, Bizuayehu TT, de Oliveira Fernandes JM, Kiron V, Babiak I.  (2013) Mar Biotechnol (NY) ePub:
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Characterization of mineral phosphate solubilization traits from a barley rhizosphere soil functional metagenome.  Chhabra S, Brazil D, Morrissey J, Burke JI, O'Gara F, N Dowling D.  (2013) Microbiologyopen ePub:
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A fast and robust method for full genome sequencing of Porcine Reproductive and Respiratory Syndrome Virus (PRRSV) Type 1 and Type 2.  Kvisgaard LK, Hjulsager CK, Fahnře U, Breum SO, Ait-Ali T, Larsen LE.  (2013) J Virol Methods ePub:
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An Integrated Tool to Study MHC Region: Accurate SNV Detection and HLA Genes Typing in Human MHC Region Using Targeted High-Throughput Sequencing.  Cao H, Wu J, Wang Y, Jiang H, Zhang T, Liu X, Xu Y, Liang D, Gao P, Sun Y, Gifford B, D'Ascenzo M, Liu X, Tellier LC, Yang F, Tong X, Chen D, Zheng J, Li W, Richmond T, Xu X, Wang J, Li Y.  (2013) PLoS One. 8(7):
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Diffuse flow environments within basalt- and sediment-based hydrothermal vent ecosystems harbor specialized microbial communities.  Campbell BJ, Polson SW, Zeigler Allen L, Williamson SJ, Lee CK, Wommack KE, Cary SC.  (2013) Front Microbiol ePub:
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Large-Scale Survey of Gut Microbiota Associated With MHE Via 16S rRNA-Based Pyrosequencing.  Zhang Z, Zhai H, Geng J, Yu R, Ren H, Fan H, Shi P. (2013) Am J Gastroenterol ePub:
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Unique and Conserved MicroRNAs in Wheat Chromosome 5D Revealed by Next-Generation Sequencing.  Kurtoglu KY, Kantar M, Lucas SJ, Budak H.  (2013) PLoS One 8(7): e69801.
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An evaluation of the impact of multiwalled carbon nanotubes on soil microbial community structure and functioning.  Shrestha B, Acosta-Martinez V, Cox SB, Green MJ, Li S, Cańas-Carrell JE.  (2013) J Hazard Mater 261C: 188-197.
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Genetic heterogeneity and consanguinity lead to a "double hit": Homozygous mutations of MYO7A and PDE6B in a patient with retinitis pigmentosa.  Goldenberg-Cohen N, Banin E, Zalzstein Y, Cohen B, Rotenstreich Y, Rizel L, Basel-Vanagaite L, Ben-Yosef T.  (2013) Mol Vis. 19: 1565-71
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Light structures phototroph, bacterial and fungal communities at the soil surface.  Davies LO, Schäfer H, Marshall S, Bramke I, Oliver RG, Bending GD.  (2013) PLoS One 8(7): e69048.
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In-Depth Characterization of Wastewater Bacterial Community in Response to Algal Growth using Pyrosequencing.  Lee J, Lee J, Lee TK, Woo SG, Baek GS, Park J.  (2013) J Microbiol Biotechnol ePub:
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Characterization of CXCR4-using HIV-1 during primary infection by ultra-deep pyrosequencing.  Raymond S, Saliou A, Nicot F, Delobel P, Dubois M, Carcenac R, Sauné K, Marchou B, Massip P, Izopet J. (2013) J Antimicrob Chemother ePub:
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Prospecting environmental mycobacteria: combined molecular approaches reveal unprecedented diversity.  Pontiroli A, Khera TT, Oakley BB, Mason S, Dowd SE, Travis ER, Erenso G, Aseffa A, Courtenay O, Wellington EM. (2013) PLoS One 8(7): e68648.
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Tracking Fungal Community Responses to Maize Plants by DNA- and RNA-Based Pyrosequencing.  Kuramae EE, Verbruggen E, Hillekens R, de Hollander M, Röling WF, van der Heijden MG, Kowalchuk GA. (2013) PLoS One 8(7): e69973.
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Metagenomic Insights into Metabolic Capacities of the Gut Microbiota in a Fungus-Cultivating Termite (Odontotermes yunnanensis).  Liu N, Zhang L, Zhou H, Zhang M, Yan X, Wang Q, Long Y, Xie L, Wang S, Huang Y, Zhou Z.  (2013) PLoS One 8(7): e69184.
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Fluorescent epibiotic microbial community on the carapace of a Bahamian ostracod.  Jarett J, Fiore C, Mazel C, Lesser M.  (2013) Arch Microbiol ePub:
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Enlarging cells initiating apomixis in Hieracium praealtum transition to an embryo sac program prior to entering mitosis.  Okada T, Hu Y, Tucker MR, Taylor JM, Johnson SD, Spriggs A, Tsuchiya T, Oelkers K, Rodrigues JC, Koltunow AM.  (2013) Plant Physiol ePub:
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Hepatitis G Virus/Gbv-C in Serum, Peripheral Blood Mononuclear Cells and Bone Marrow in Patients with Hematological Malignancies.  Kisiel E, Cortez KC, Pawełczyk A, Oœko IB, Kubisa N, Laskus T, Radkowski M.  (2013) Infect Genet Evol ePub:
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Whole Exome Sequencing Identifies a Causal RBM20 Mutation in a Large Pedigree with Familial Dilated Cardiomyopathy.  Wells QS, Becker JR, Su YR, Mosley JD, Weeke P, D'Aoust L, Ausborn NL, Ramirez AH, Pfotenhauer JP, Naftilan AJ, Markham L, Exil V, Roden DM, Hong CC.  (2013) Circ Cardiovasc Genet. [Epub ahead of print]:
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Populus euphratica: the transcriptomic response to drought stress.  Tang S, Liang H, Yan D, Zhao Y, Han X, Carlson JE, Xia X, Yin W.  (2013) Plant Mol Biol ePub:
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Influence of Salmonella enterica serovar Enteritidis infection on the composition of chicken cecal microbiota.  Videnska P, Sisak F, Havlickova H, Faldynova M, Rychlik I.  (2013) BMC Vet Res 9(1): 140.
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Diversity of the spinach (Spinacia oleracea) spermosphere and phyllosphere bacterial communities.  Lopez-Velasco G, Carder PA, Welbaum GE, Ponder MA.  (2013) FEMS Microbiol Lett ePub:
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Seawater Inundation from the 2011 Tohoku Tsunami Continues to Strongly Affect Soil Bacterial Communities 1 Year Later.  Asano R, Nakai Y, Kawada W, Shimura Y, Inamoto T, Fukushima J.  (2013) Microb Ecol ePub:
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First insights into the microbiome of a carnivorous sponge.  Dupont S, Corre E, Li Y, Vacelet J, Bourguet-Kondracki ML. (2013) FEMS Microbiol Ecol ePub:
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Colonic mucosa-associated diffusely adherent afaC+ Escherichia coli expressing lpfA and pks are increased in inflammatory bowel disease and colon cancer.  Prorok-Hamon M, Friswell MK, Alswied A, Roberts CL, Song F, Flanagan PK, Knight P, Codling C, Marchesi JR, Winstanley C, Hall N, Rhodes JM, Campbell BJ. (2013) Gut ePub:
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Association of mitochondrial genetic variation with carotid atherosclerosis.  Sobenin IA, Sazonova MA, Postnov AY, Salonen JT, Bobryshev YV, Orekhov AN. (2013) PLoS One 8(7): e68070.
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Transcriptional profiling of sweetpotato (Ipomoea batatas) roots indicates down-regulation of lignin biosynthesis and up-regulation of starch biosynthesis at an early stage of storage root formation.  Firon N, Labonte D, Villordon A, Kfir Y, Solis J, Lapis E, Perlman TS, Doron-Faigenboim A, Hetzroni A, Althan L, Nadir LA. (2013) BMC Genomics 14(1): 460.
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Evidence for isolated evolution of deep-sea ciliate communities through geological separation and environmental selection.  Stock A, Edgcomb V, Orsi W, Filker S, Breiner HW, Yakimov MM, Stoeck T. (2013) BMC Microbiol 13(1): 150.
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Genome sequence and comparative analysis of Avibacterium paragallinarum.  Requena D, Chumbe A, Torres M, Alzamora O, Ramirez M, Valdivia-Olarte H, Gutierrez AH, Izquierdo-Lara R, Saravia LE, Zavaleta M, Tataje-Lavanda L, Best I, Fernández-Sánchez M, Icochea E, Zimic M, Fernández-Díaz M.  (2013) BIoinformation 9(10): 528-36.
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A novel GUSB mutation in Brazilian terriers with severe skeletal abnormalities defines the disease as mucopolysaccharidosis VII.  Hytönen MK, Arumilli M, Lappalainen AK, Kallio H, Snellman M, Sainio K, Lohi H.  (2013) PLoS One. 7(7):
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Biomineral Proteins from Mytilus edulis Mantle Tissue Transcriptome.  Freer A, Bridgett S, Jiang J, Cusack M. (2013) Mar Biotechnol (NY) ePub:
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Next generation sequencing of viral RNA genomes.  Marston DA, McElhinney LM, Ellis RJ, Horton DL, Wise EL, Leech SL, David D, de Lamballerie X, Fooks AR. (2013) BMC Genomics 14(1): 444.
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Obesity-induced gut microbial metabolite promotes liver cancer through senescence secretome.  Yoshimoto S, Loo TM, Atarashi K, Kanda H, Sato S, Oyadomari S, Iwakura Y, Oshima K, Morita H, Hattori M, Honda K, Ishikawa Y, Hara E, Ohtani N. (2013) Nature 499(7456): 97-101.
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Transcriptome Analysis in Sheepgrass (Leymus chinensis): A Dominant Perennial Grass of the Eurasian Steppe.  Chen S, Huang X, Yan X, Liang Y, Wang Y, Li X, Peng X, Ma X, Zhang L, Cai Y, Ma T, Cheng L, Qi D, Zheng H, Yang X, Li X, Liu G.  (2013) PLoS One 8(7): e67974.
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Do honeybees shape the bacterial community composition in floral nectar?  Aizenberg-Gershtein Y, Izhaki I, Halpern M. (2013) PLoS One 8(7): e67556.
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Reduced incidence of prevotella and other fermenters in intestinal microflora of autistic children.  Kang DW, Park JG, Ilhan ZE, Wallstrom G, Labaer J, Adams JB, Krajmalnik-Brown R. (2013) PLoS One 8(7): e68322.
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Using High-Throughput Sequencing to Leverage Surveillance of Genetic Diversity and Oseltamivir Resistance: A Pilot Study during the 2009 Influenza A(H1N1) Pandemic.  Téllez-Sosa J, Rodríguez MH, Gómez-Barreto RE, Valdovinos-Torres H, Hidalgo AC, Cruz-Hervert P, Luna RS, Carrillo-Valenzo E, Ramos C, García-García L, Martínez-Barnetche J. (2013) PLoS One 8(7): e67010.
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The effects of a probiotic yeast on the bacterial diversity and population structure in the rumen of cattle.  Pinloche E, McEwan N, Marden JP, Bayourthe C, Auclair E, Newbold CJ. (2013) PLoS One 8(7): e67824.
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Population dynamics during startup of thermophilic anaerobic digesters: The mixing factor.  Ghanimeh SA, Saikaly PE, Li D, El-Fadel M. (2013) Waste Manag ePub:
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An integrated study reveals diverse methanogens, Thaumarchaeota, and yet-uncultivated archaeal lineages in Armenian hot springs.  Hedlund BP, Dodsworth JA, Cole JK, Panosyan HH.  (2013) Antonie Van Leeuwenhoek 104(1): 71-82.
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Changes in soil bacterial community structure with increasing disturbance frequency.  Kim M, Heo E, Kang H, Adams J.  (2013) Microb Ecol 66(1): 171-81.
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Bacterial abundance and composition in marine sediments beneath the Ross Ice Shelf, Antarctica.  Carr SA, Vogel SW, Dunbar RB, Brandes J, Spear JR, Levy R, Naish TR, Powell RD, Wakeham SG, Mandernack KW.  (2013) Geobiology 11(4): 377-95.
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Perturbation of the indigenous rat oral microbiome by ciprofloxacin dosing.  Manrique P, Freire MO, Chen C, Zadeh HH, Young M, Suci P. (2013) Mol Oral Microbiol ePub:
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Comparison of commercially available target enrichment methods for next-generation sequencing.  Bodi K, Perera AG, Adams PS, Bintzler D, Dewar K, Grove DS, Kieleczawa J, Lyons RH, Neubert TA, Noll AC, Singh S, Steen R, Zianni M.  (2013) J Biomol Tech. 24(2): 73-86
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Microbial growth, communities and sensory characteristics of vacuum and modified atmosphere packaged lamb shoulders.  Kiermeier A, Tamplin M, May D, Holds G, Williams M, Dann A. (2013) Food Microbiol ePub:
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Microsatellite analyses across three diverse vertebrate transcriptomes (Acipenser fulvescens, Ambystoma tigrinum, and Dipodomys spectabilis).  Doyle JM, Siegmund G, Ruhl JD, Eo SH, Hale MC, Marra NJ, Waser PM, Dewoody JA. (2013) Genome 56(7): 407-14.
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Analysis of oxygen reduction and microbial community of air-diffusion biocathode in microbial fuel cells.  Wang Z, Zheng Y, Xiao Y, Wu S, Wu Y, Yang Z, Zhao F.  (2013) Bioresour Technol 144C: 74-79.
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Electricity generation from food wastes and microbial community structure in microbial fuel cells.  Jia J, Tang Y, Liu B, Wu D, Ren N, Xing D. (2013) Bioresour Technol 144C: 94-99.
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Complete genome sequence of a novel Plum pox virus strain W isolate determined by 454 pyrosequencing.  Sheveleva A, Kudryavtseva A, Speranskaya A, Belenikin M, Melnikova N, Chirkov S. (2013) Virus Genes ePub:
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Exome sequencing resolves apparent incidental findings and reveals further complexity of SH3TC2 variant alleles causing Charcot-Marie-Tooth neuropathy  Lupski JR, Gonzaga-Jauregui C, Yang Y, Bainbridge MN, Jhangiani S, Buhay CJ, Kovar CL, Wang M, Hawes AC, Reid JG, Eng C, Muzny DM, Gibbs RA.  (2013) Genome Med. 5(6):57. [Epub ahead of print]:
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Intestinal dysbiosis and depletion of butyrogenic bacteria in Clostridium difficile infection and nosocomial diarrhea.  Antharam VC, Li E, Ishmael A, Sharma A, Mai V, Rand KH, Wang GP. (2013) J Clin Microbiol ePub:
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Strategies for Wheat Stripe Rust Pathogenicity Identified by Transcriptome Sequencing.  Garnica DP, Upadhyaya NM, Dodds PN, Rathjen JP. (2013) PLoS One 8(6): e67150.
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Effect of Probiotic Bacteria on the Intestinal Microbiota in Irritable Bowel Syndrome.  Ng SC, Lam EF, Lam TT, Chan Y, Law W, Tse PC, Kamm MA, Sung JJ, Chan FK, Wu JC. (2013) J Gastroenterol Hepatol ePub:
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A high-throughput microfluidic dental plaque biofilm system to visualize and quantify the effect of antimicrobials.  Nance WC, Dowd SE, Samarian D, Chludzinski J, Delli J, Battista J, Rickard AH. (2013) J Antimicrob Chemother ePub:
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Exome sequencing identifies recurrent somatic mutations in EIF1AX and SF3B1 in uveal melanoma with disomy 3.  Martin M, Maßhöfer L, Temming P, Rahmann S, Metz C, Bornfeld N, van de Nes J, Klein-Hitpass L, Hinnebusch AG, Horsthemke B, Lohmann DR, Zeschnigk M.  (2013) Nat Genet. [Epub ahead of print]:
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The transcriptome of Echinostoma caproni adults: Further characterization of the secretome and identification of new potential drug targets.  Garg G, Bernal D, Trelis M, Forment J, Ortiz J, Valero ML, Pedrola L, Martinez-Blanch J, Esteban JG, Ranganathan S, Toledo R, Marcilla A. (2013) J Proteomics pii: S1874-3919: (13)00334-5.
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Diversity of Microbial Communities in Production and Injection Waters of Algerian Oilfields Revealed by 16S rRNA Gene Amplicon 454 Pyrosequencing.  Lenchi N, Inceođlu O, Kebbouche-Gana S, Gana ML, Llirós M, Servais P, García-Armisen T. (2013) PLoS One 8(6): e66588.
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A comprehensive and integrative reconstruction of evolutionary history for Anomura (Crustacea: Decapoda).  Bracken-Grissom HD, Cannon ME, Cabezas P, Feldmann RM, Schweitzer CE, Ahyong ST, Felder DL, Lemaitre R, Crandall KA.  (2013) BMC Evol Biol 13(1): 128.
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Microbial community dynamics during acetate biostimulation of RDX-contaminated groundwater.  Livermore J, Jin YO, Lepuil M, Arnseth R, Mattes TE.  (2013) Environ Sci Technol ePub:
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The Ecology of Microbial Communities Associated with Macrocystis pyrifera.  Michelou VK, Caporaso JG, Knight R, Palumbi SR. (2013) PLoS One 8(6): e67480.
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Quantifying single nucleotide variant detection sensitivity in exome sequencing  Meynert AM, Bicknell LS, Hurles ME, Jackson AP, Taylor MS.  (2013) BMC Bioinformatics 14:195. doi: 10.1186/1471-2105-14-195.:
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Salmon lice (Lepeophtheirus salmonis) showing varying emamectin benzoate susceptibilities differ in neuronal acetylcholine receptor and GABA-gated chloride channel mRNA expression.  Carmichael SN, Bron JE, Taggart JB, Ireland JH, Bekaert M, Burgess ST, Skuce PJ, Nisbet AJ, Gharbi K, Sturm A.  (2013) BMC Genomics 14(1): 408.
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Transcriptome sequencing and de novo annotation of the critically endangered Adriatic sturgeon.  Vidotto M, Grapputo A, Boscari E, Barbisan F, Coppe A, Grandi G, Kumar A, Congiu L.  (2013) BMC Genomics 14(1): 407.
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Analysis of the Olive Fruit Fly Bactrocera oleae Transcriptome and Phylogenetic Classification of the Major Detoxification Gene Families.  Pavlidi N, Dermauw W, Rombauts S, Chrisargiris A, Van Leeuwen T, Vontas J. (2013) PLoS One 8(6): e66533.
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Mutational Landscape of Basal Cell Carcinomas by Whole Exome Sequencing.  Jayaraman SS, Rayhan DJ, Hazany S, Kolodney MS. (2013) J Invest Dermatol. doi: 10.1038: 276
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HOXA2 haploinsufficiency in dominant bilateral microtia and hearing loss.  Brown KK, Viana LM, Helwig CC, Artunduaga MA, Quintanilla-Dieck L, Jarrin P, Osorno G, McDonough B, Depalma SR, Eavey RD, Seidman JG, Seidman CE.  (2013) Hum Mutat. doi: 10.1002: 22367
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A mitogenomic phylogeny of living primates.  Finstermeier K, Zinner D, Brameier M, Meyer M, Kreuz E, Hofreiter M, Roos C.  (2013) PLoS One 8(7): e69504.
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Total Parenteral Nutrition-Associated Lamina Propria Inflammation in Mice Is Mediated by a MyD88-Dependent Mechanism.  Miyasaka EA, Feng Y, Poroyko V, Falkowski NR, Erb-Downward J, Gillilland MG 3rd, Mason KL, Huffnagle GB, Teitelbaum DH.  (2013) J Immunol 190(12): 6607-15.
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Effects of Administration of Live or Inactivated Virulent Rhodococccus equi and Age on the Fecal Microbiome of Neonatal Foals.  Bordin AI, Suchodolski JS, Markel ME, Weaver KB, Steiner JM, Dowd SE, Pillai S, Cohen ND. (2013) PLoS One 8(6): e66640.
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Mutations in KARS, Encoding Lysyl-tRNA Synthetase, Cause Autosomal-Recessive Nonsyndromic Hearing Impairment DFNB89  Santos-Cortez RL, Lee K, Azeem Z, Antonellis PJ, Pollock LM, Khan S, Irfanullah, Andrade-Elizondo PB, Chiu I, Adams MD, Basit S, Smith JD; University of Washington Center for Mendelian Genomics, Nickerson DA, McDermott BM Jr, Ahmad W, Leal SM.  (2013) Am J Hum Genet. pii: S0002-9297(13)00231-0. doi: 10.1016/j.ajhg.2013.05.018. [Epub ahead of print]:
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Comparative analysis of a teleost skeleton transcriptome provides insight into its regulation.  Vieira FA, Thorne MA, Stueber K, Darias M, Reinhardt R, Clark MS, Gisbert E, Power DM.  (2013) Gen Comp Endocrinol pii: S0016-6480: (13)00264-5.
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Exome sequencing of 47 chinese families with cone-rod dystrophy: mutations in 25 known causative genes.  Huang L, Zhang Q, Li S, Guan L, Xiao X, Zhang J, Jia X, Sun W, Zhu Z, Gao Y, Yin Y, Wang P, Guo X, Wang J, Zhang Q.  (2013) PLoS One. 8(6):e65546. doi: 10.1371:
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Testing for Rare Variant Associations in the Presence of Missing Data  Auer PL, Wang G; NHLBI Exome Sequencing Project, Leal SM.  (2013) Genet Epidemiol. doi: 10.1002/gepi.21736. [Epub ahead of print]:
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Functional and compositional succession of bacterioplankton in response to a gradient in bioavailable dissolved organic carbon.  Dinasquet J, Kragh T, Schrřter ML, Sřndergaard M, Riemann L. (2013) Environ Microbiol ePub:
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Bi-PROF: Bisulfite profiling of target regions using 454 GS FLX Titanium technology.  Gries J, Schumacher D, Arand J, Lutsik P, Markelova MR, Fichtner I, Walter J, Sers C, Tierling S. (2013) Epigenetics 8: 7.
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Inhibiting Polo-like kinase 1 causes growth reduction and apoptosis in pediatric acute lymphoblastic leukemia cells.  Hartsink-Segers SA, Exalto C, Allen M, Williamson D, Clifford SC, Horstmann M, Caron HN, Pieters R, Den Boer ML.  (2013) Haematologica ePub:
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Comparison of NOM removal and microbial properties in up-flow/down-flow BAC filter.  Han L, Liu W, Chen M, Zhang M, Liu S, Sun R, Fei X.  (2013) Water Research ePub:
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Fungal High-throughput Taxonomic Identification tool for use with Next-Generation Sequencing (FHiTINGS).  Dannemiller KC, Reeves D, Bibby K, Yamamoto N, Peccia J.  (2013) J Basic Microbiol ePub:
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Sequencing viral genomes from a single isolated plaque.  Depew J, Zhou B, McCorrison JM, Wentworth DE, Purushe J, Koroleva G, Fouts DE.  (2013) Virology Journal 10(1): 181.
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Overexpression of sheepgrass R1-MYB transcription factor LcMYB1 confers salt tolerance in transgenic Arabidopsis.  Cheng L, Li X, Huang X, Ma T, Liang Y, Ma X, Peng X, Jia J, Chen S, Chen Y, Deng B, Liu G. (2013) Plant Physiol Biochem 70C: 252-260.
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Long Runs of Homozygosity Are Enriched for Deleterious Variation  Szpiech ZA, Xu J, Pemberton TJ, Peng W, Zöllner S, Rosenberg NA, Li JZ.  (2013) Am J Hum Genet. pii: S0002-9297(13)00216-4. doi: 10.1016/j.ajhg.2013.05.003. [Epub ahead of print]:
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Mutations in KLHL40 Are a Frequent Cause of Severe Autosomal-Recessive Nemaline Myopathy.  Ravenscroft G, et al. (2013) Am J Hum Genet. pii: S0002-9297(13)00217-6. doi: 10.1016/j.ajhg.2013.05.004. [Epub ahead of print]:
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Microbial succession and metabolite changes during fermentation of dongchimi, traditional Korean watery kimchi.  Jeong SH, Jung JY, Lee SH, Jin HM, Jeon CO.  (2013) Int J Food Microbiol 164(1): 46-53.
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Nitritation versus full nitrification of ammonium-rich wastewater: Comparison in terms of nitrous and nitric oxides emissions.  Rodriguez-Caballero A, Ribera A, Balcázar JL, Pijuan M.  (2013) Bioresour Technol 139: 195-202.
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Isolation and characterization of Staphylococcus aureus strains from a Paso del Norte dairy.  Matyi SA, Dupre JM, Johnson WL, Hoyt PR, White DG, Brody T, Odenwald WF, Gustafson JE.  (2013) J Dairy Sci 96(6): 3535-42.
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Next-Generation HLA Sequencing Using the 454 GS FLX System.  Trachtenberg EA, Holcomb CL.  (2013) Metholds Mol Biol 1034: 197-219.
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A novel ATP8 gene mutation in an infant with tetralogy of Fallot.  Tansel T, Paçal F, Ustek D. (2013) Cardiol Young 1-3: ePub.
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Mutant-bin: unsupervised haplotype estimation of viral population diversity without reference genome.  Prabhakara S, Malhotra R, Acharya R, Poss M.  (2013) j Comput Biol 20(6): 453-63.
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A microbiology-based multi-parametric approach towards assessing biological stability in drinking water distribution networks.  Lautenschlager K, Hwang C, Liu WT, Boon N, Köster O, Vrouwenvelder H, Egli T, Hammes F.  (2013) Water Res 47(9): 3015-25.
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Transcriptome sequencing as a platform to elucidate molecular components of the diapause response in the Asian tiger mosquito, Aedes albopictus.  Poelchau MF, Reynolds JA, Denlinger DL, Elsik CG, Armbruster PA. (2013) Physiol Entomol 38(2): 173-181.
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The transition from a phytopathogenic smut ancestor to an anamorphic biocontrol agent deciphered by comparative whole-genome analysis.  Lefebvre F, Joly DL, Labbé C, Teichmann B, Linning R, Belzile F, Bakkeren G, Bélanger RR. (2013) Plant Cell 25(6): 1946-59.
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Evolutionary change driven by metal exposure as revealed by coding SNP genome scan in wild yellow perch (Perca flavescens).  Bélanger-Deschęnes S, Couture P, Campbell PG, Bernatchez L.  (2013) Ecotoxicology ePub:
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Identification of driver genes in hepatocellular carcinoma by exome sequencing.  Cleary SP, Jeck WR, Zhao X, Kuichen, Selitsky SR, Savich GL, Tan TX, Wu MC, Getz G, Lawrence MS, Parker JS, Li J, Powers S, Kim H, Fischer S, Giundi M, Ghanekar A, Chiang DY.  (2013) Hepatology doi: 10.1002/hep.26540. [Epub ahead of print]:
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Oral bacterial community dynamics in paediatric patients with malignancies in relation to chemotherapy-related oral mucositis: a prospective study.  Ye Y, Carlsson G, Agholme MB, Wilson JA, Roos A, Henriques-Normark B, Engstrand L, Modéer T, Pütsep K. (2013) Clin Microbiol Infect ePub:
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Transcriptome and proteome data reveal candidate genes for pollinator attraction in sexually deceptive orchids.  Sedeek KE, Qi W, Schauer MA, Gupta AK, Poveda L, Xu S, Liu ZJ, Grossniklaus U, Schiestl FP, Schlüter PM.  (2013) PLoS One 8(5): e64621.
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Mining genes involved in the stratification of Paris Polyphylla seeds using high-throughput embryo Transcriptome sequencing.  Qi J, Zheng N, Zhang B, Sun P, Hu S, Xu W, Ma Q, Zhao T, Zhou L, Qin M, Li X. (2013) BMC Genomics 14(1): 358.
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Replication fitness of multiple NNRTI-resistant HIV-1 variants in the presence of etravirine measured by 454 deep sequencing.  Brumme CJ, Huber KD, Dong W, Poon AF, Harrigan PR, Sluis-Cremer N.  (2013) J Virology ePub:
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Whole genome sequencing and comparative genomic analyses of two Vibrio cholerae O139 Bengal-specific Podoviruses to other N4-like phages reveal extensive genetic diversity.  Fouts DE, Klumpp J, Bishop-Lilly KA, Rajavel M, Willner KM, Butani A, Henry M, Biswas B, Li M, Albert MJ, Loessner MJ, Calendar R, Sozhamannan S.  (2013) Virology Journal 10(1): 165.
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Tomato breeding in the genomics era: insights from a SNP array.  Víquez-Zamora M, Vosman B, van de Geest H, Bovy A, Visser RG, Finkers R, van Heusden AW.  (2013) BMC Genomics 14(1): 354.
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Characterization of pKP1780, a novel IncR plasmid from the emerging Klebsiella pneumoniae ST147, encoding the VIM-1 metallo-â-lactamase.  Papagiannitsis CC, Miriagou V, Giakkoupi P, Tzouvelekis LS, Vatopoulos AC.  (2013) J Antimicrob Chemother ePub:
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Candidate Chemosensory Genes in the Stemborer Sesamia nonagrioides.  Glaser N, Gallot A, Legeai F, Montagné N, Poivet E, Harry M, Calatayud PA, Jacquin-Joly E.  (2013) Int J Biol Sci 9(5): 481-95.
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Evolution of the plankton paleome in the Black Sea from the Deglacial to Anthropocene.  Coolen MJ, Orsi WD, Balkema C, Quince C, Harris K, Sylva SP, Filipova-Marinova M, Giosan L.  (2013) PNAS 110(21): 8609-14.
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Transcriptome sequencing to produce SNP-based genetic maps of onion.  Duangjit J, Bohanec B, Chan AP, Town CD, Havey MJ.  (2013) Theor Appl Genet ePub:
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Microbial diversity analysis of fermented mung beans (lu-doh-huang) by using pyrosequencing and culture methods.  Chao SH, Huang HY, Chang CH, Yang CH, Cheng WS, Kang YH, Watanabe K, Tsai YC.  (2013) PLoS One 8(5): e63816.
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Chicken innate immune response to oral infection with Salmonella enterica serovar Enteritidis.  Matulova M, Varmuzova K, Sisak F, Havlickova H, Babak V, Stejskal K, Zdrahal Z, Rychlik I.  (2013) Vet Res 44(1): 37.
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Clarifying Bunyamwera virus riddles of the past.  Dilcher M, Sall AA, Hufert FT, Weidmann M.  (2013) Virus Genes ePub:
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The Human Gut Chip "HuGChip", an Explorative Phylogenetic Microarray for Determining Gut Microbiome Diversity at Family Level.  Tottey W, Denonfoux J, Jaziri F, Parisot N, Missaoui M, Hill D, Borrel G, Peyretaillade E, Alric M, Harris HM, Jeffery IB, Claesson MJ, O'Toole PW, Peyret P, Brugčre JF.  (2013) PLoS One 8(5): e62544.
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Transcriptome Analysis of Barbarea vulgaris Infested with Diamondback Moth (Plutella xylostella) Larvae.  Wei X, Zhang X, Shen D, Wang H, Wu Q, Lu P, Qiu Y, Song J, Zhang Y, Li X.  (2013) PLoS One 8(5): e64481.
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454-Pyrosequencing Analyses of Bacterial And Archaeal Richness In 21 Full-Scale Biogas Digesters.  Sundberg C, Al-Soud WA, Larsson M, Alm E, Shakeri Yekta S, Svensson BH, Sřrensen SJ, Karlsson A.  (2013) FEMS Microbiol Ecol ePub:
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Investigating the Diversity of Pseudomonas spp. in Soil Using Culture Dependent and Independent Techniques.  Li L, Abu Al-Soud W, Bergmark L, Riber L, Hansen LH, Magid J, Sřrensen SJ.  (2013) Curr Microbiol ePub:
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Transcriptome resources and functional characterization of monoterpene synthases for two host species of the mountain pine beetle, lodgepole pine (Pinus contorta) and jack pine (Pinus banksiana).  Hall DE, Yuen MM, Jancsik S, Quesada AL, Dullat HK, Li M, Henderson H, Arango-Velez A, Liao NY, Docking RT, Chan SK, Cooke JE, Breuil C, Jones SJ, Keeling CI, Bohlmann J.  (2013) BMC Plant Biol 13(1): 80.
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The lactic acid bacteria and yeast microbiota of eighteen sourdoughs used for the manufacture of traditional Italian sweet leavened baked goods.  Lattanzi A, Minervini F, Di Cagno R, Diviccaro A, Antonielli L, Cardinali G, Cappelle S, De Angelis M, Gobbetti M.  (2013) Int J Food Microbiol 163(2-3): 71-9.
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IL-22 deficiency alters colonic microbiota to be transmissible and colitogenic.  Zenewicz LA, Yin X, Wang G, Elinav E, Hao L, Zhao L, Flavell RA.  (2013) J Immunol 190(10): 5306-12.
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Characterisation of a transcriptome to find sequence differences between two differentially migrating subspecies of the willow warbler Phylloscopus trochilus.  Lundberg M, Boss J, Canbäck B, Liedvogel M, Larson KW, Grahn M, Akesson S, Bensch S, Wright A.  (2013) BMC Genomics 14(1): 330.
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Maraviroc treatment in non-R5-HIV-1-infected patients results in the selection of extreme CXCR4-using variants with limited effect on the total viral setpoint.  McGovern RA, Symons J, Poon AF, Harrigan PR, van Lelyveld SF, Hoepelman AI, van Ham PM, Dong W, Wensing AM, Nijhuis M.  (2013) J Antimicrob Chemother ePub:
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Exploring the larval transcriptome of the common sole (Solea solea L.).  Ferraresso S, Bonaldo A, Parma L, Cinotti S, Massi P, Bargelloni L, Gatta PP.  (2013) BMC Genomics 14(1): 315.
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Novel genomic resources for a climate change sensitive mammal: Characterization of the American pika transcriptome.  Lemay MA, Henry P, Lamb CT, Robson KM, Russello MA.  (2013) BMC Genomics 14(1): 311.
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Using Ultradeep Pyrosequencing to Study HIV-1 Coreceptor Usage in Primary and Dual Infection.  Wagner GA, Pacold ME, Vigil E, Caballero G, Morris SR, Kosakovsky Pond SL, Little SJ, Richman DD, Gianella S, Smith DM.  (2013) J Infectious Diseases ePub:
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Discovery of (hemi-) cellulase genes in a metagenomic library from a biogas digester using 454 pyrosequencing.  Yan X, Geng A, Zhang J, Wei Y, Zhang L, Qian C, Wang Q, Wang S, Zhou Z.  (2013) Appl Microbiol Biotechnol ePub:
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Employing 454 amplicon pyrosequencing to reveal intragenomic divergence in the internal transcribed spacer rDNA region in fungi.  Lindner DL, Carlsen T, Henrik Nilsson R, Davey M, Schumacher T, Kauserud H.  (2013) Ecol Evol 3(6):: 1751-1764.
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Control of temperature on microbial community structure in hot springs of the tibetan plateau.  Wang S, Hou W, Dong H, Jiang H, Huang L, Wu G, Zhang C, Song Z, Zhang Y, Ren H, Zhang J, Zhang L.  (2013) PLoS One 8(5): e62901.
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Transcriptome Sequencing of Zhikong Scallop (Chlamys farreri) and Comparative Transcriptomic Analysis with Yesso Scallop (Patinopecten yessoensis).  Wang S, Hou R, Bao Z, Du H, He Y, Su H, Zhang Y, Fu X, Jiao W, Li Y, Zhang L, Wang S, Hu X.  (2013) PLoS One 8(5): e63927.
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Whole-genome, deep pyrosequencing analysis of a duck influenza A virus evolution in swine cells.  Bourret V, Croville G, Mariette J, Klopp C, Bouchez O, Tiley L, Guérin JL.  (2013) Infect Genet Evol pii: S1567-1348: (13)00183-4.
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Examination with Next-Generation Sequencing Technology of the Bacterial Microbiota in Bronchoalveolar Lavage Samples after Traumatic Injury.  Huebinger RM, Liu MM, Dowd SE, Rivera-Chavez FA, Boynton J, Carey C, Hawkins K, Minshall CT, Wolf SE, Minei JP, Barber RC.  (2013) Surg Infect (Larchmt) ePub:
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Complete genome sequence of a polyvalent bacteriophage, phiKP26, active on Salmonella and Escherichia coli.  Amarillas L, Cháidez-Quiroz C, Sańudo-Barajas A, León-Félix J.  (2013) Arch Virol ePub:
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Characterization of a novel Rickettsiella in the leafhopper Orosius albicinctus (Hemiptera: Cicadellidae).  Iasur-Kruh L, Weintraub PG, Mozes-Daube N, Robinson WE, Perlman SJ, Zchori-Fein E.  (2013) Appl Environ Microbiol ePub:
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Next generation whole genome sequencing identifies the direction of norovirus transmission in linked patients.  Kundu S, Lockwood J, Depledge DP, Chaudhry Y, Aston A, Rao K, Hartley JC, Goodfellow I, Breuer J.  (2013) Clin Infect Dis ePub:
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Contrasting genomic properties of free-living and particle-attached microbial assemblages within a coastal ecosystem.  Smith MW, Zeigler Allen L, Allen AE, Herfort L, Simon HM.  (2013) Front Microbiol 4: 120.
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A De Novo Mutation in the â-Tubulin Gene TUBB4A Results in the Leukoencephalopathy Hypomyelination with Atrophy of the Basal Ganglia and Cerebellum.  Simons C, Wolf NI, McNeil N, Caldovic L, Devaney JM, Takanohashi A, Crawford J, Ru K, Grimmond SM, Miller D, Tonduti D, Schmidt JL, Chudnow RS, van Coster R, Lagae L, Kisler J, Sperner J, van der Knaap MS, Schiffmann R, Taft RJ, Vanderver A.  (2013) Am J Hum Genet 92(5): 767-73.
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Altered Gut Microbiota Promotes Colitis-Associated Cancer in IL-1 Receptor-Associated Kinase M-Deficient Mice.  Klimesova K, Kverka M, Zakostelska Z, Hudcovic T, Hrncir T, Stepankova R, Rossmann P, Ridl J, Kostovcik M, Mrazek J, Kopecny J, Kobayashi KS, Tlaskalova-Hogenova H. (2013) Inflamm Bowel Dis 19(6): 1266-1277.
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Intestinal microbiota metabolism of l-carnitine, a nutrient in red meat, promotes atherosclerosis.  Koeth RA, Wang Z, Levison BS, Buffa JA, Org E, Sheehy BT, Britt EB, Fu X, Wu Y, Li L, Smith JD, Didonato JA, Chen J, Li H, Wu GD, Lewis JD, Warrier M, Brown JM, Krauss RM, Tang WH, Bushman FD, Lusis AJ, Hazen SL. (2013) Nature 19(5): 576-85.
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Nutrient enrichment increased species richness of leaf litter fungal assemblages in a tropical forest.  Kerekes J, Kaspari M, Stevenson B, Nilsson RH, Hartmann M, Amend A, Bruns TD.  (2013) Mol Ecol 22(10): 2827-38.
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Somatic Alterations Contributing to Metastasis of a Castration Resistant Prostate Cancer.  Nickerson ML, Im KM, Misner KJ, Tan W, Lou H, Gold B, Wells DW, Bravo HC, Fredrikson KM, Harkins TT, Milos P, Zbar B, Linehan WM, Yeager M, Andresson T, Dean M, Bova GS. (2013) Hum Mutat ePub:
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A survey of bacterial diversity from successive life stages of black soldier fly (Diptera: Stratiomyidae) by using 16S rDNA pyrosequencing.  Zheng L, Crippen TL, Singh B, Tarone AM, Dowd S, Yu Z, Wood TK, Tomberlin JK. (2013) J Med Entomol 50(3): 647-58.
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Naphthalene biodegradation in temperate and arctic marine microcosms.  Bagi A, Pampanin DM, Lanzén A, Bilstad T, Kommedal R.  (2013) Biodegradation ePub:
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Inflammation and airway microbiota during cystic fibrosis pulmonary exacerbations.  Zemanick ET, Harris JK, Wagner BD, Robertson CE, Sagel SD, Stevens MJ, Accurso FJ, Laguna TA.  (2013) PLoS One 8(4): e62917.
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Next-generation sequencing of cancer consensus genes in lymphoma.  Hüllein J, Jethwa A, Stolz T, Blume C, Sellner L, Sill M, Langer C, Jauch A, Paruzynski A, von Kalle C, Schmidt M, Glimm H, Zenz T.  (2013) Leuk Lymphoma ePub:
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Ultradeep pyrosequencing of hepatitis C virus hypervariable region 1 in quasispecies analysis.  Caraballo Cortés K, Zagordi O, Laskus T, Płoski R, Bukowska-Oœko I, Pawełczyk A, Berak H, Radkowski M.  (2013) Biomed Res Int 2013: 626083.
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Molecular characterization of the fecal microbiota in patients with nonalcoholic steatohepatitis--a longitudinal study.  Wong VW, Tse CH, Lam TT, Wong GL, Chim AM, Chu WC, Yeung DK, Law PT, Kwan HS, Yu J, Sung JJ, Chan HL.  (2013) PLoS One 8(4): e62885.
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Transcriptome analysis of buds and leaves using 454 pyrosequencing to discover genes associated with the biosynthesis of active ingredients in Lonicera japonica Thunb.  He L, Xu X, Li Y, Li C, Zhu Y, Yan H, Sun Z, Sun C, Song J, Bi Y, Shen J, Cheng R, Wang Z, Xiao W, Chen S.  (2013) PLoS One 8(4): e62922.
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Bacterial community profiling of milk samples as a means to understand culture-negative bovine clinical mastitis.  Kuehn JS, Gorden PJ, Munro D, Rong R, Dong Q, Plummer PJ, Wang C, Phillips GJ. (2013) PLoS One 8(4): e61959.
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Impact of oral typhoid vaccination on the human gut microbiota and correlations with s. Typhi-specific immunological responses.  Eloe-Fadrosh EA, McArthur MA, Seekatz AM, Drabek EF, Rasko DA, Sztein MB, Fraser CM.  (2013) PLoS One 8(4): e62026.
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Transplantation-associated long-term immunosuppression promotes oral colonization by potentially opportunistic pathogens without impacting other members of the salivary bacteriome.  Diaz PI, Hong BY, Frias-Lopez J, Dupuy AK, Angeloni M, Abusleme L, Terzi E, Ioannidou E, Strausbaugh LD, Dongari-Bagtzoglou A.  (2013) Clin Vaccine Immunol ePub:
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Metagenomic analysis of a tropical composting operation at the săo paulo zoo park reveals diversity of biomass degradation functions and organisms.  Martins LF, Antunes LP, Pascon RC, de Oliveira JC, Digiampietri LA, Barbosa D, Peixoto BM, Vallim MA, Viana-Niero C, Ostroski EH, Telles GP, Dias Z, da Cruz JB, Juliano L, Verjovski-Almeida S, da Silva AM, Setubal JC.  (2013) PLoS One 8(4): e61928.
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Archaeal and bacterial diversity in acidic to circumneutral hot springs in the Philippines.  Huang Q, Jiang H, Briggs BR, Wang S, Hou W, Li G, Wu G, Solis R, Arcilla CA, Abrajano T, Dong H.  (2013) FEMS Microbiol Ecol ePub:
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Habitat and host related variation in sponge bacterial symbiont communities in Indonesian waters.  Cleary DF, Becking LE, de Voogd NJ, Pires AC, Polónia AR, Egas C, Gomes NC.  (2013) FEMS Microbiol Ecol ePub:
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Shedding light on the microbial community of the macropod foregut using 454-amplicon pyrosequencing.  Gulino LM, Ouwerkerk D, Kang AY, Maguire AJ, Kienzle M, Klieve AV.  (2013) PLoS One 8(4): e61463.
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Transcriptome characterisation of Pinus tabuliformis and evolution of genes in the Pinus phylogeny.  Niu SH, Li ZX, Yuan HW, Chen XY, Li Y, Li W.  (2013) BMC Genomics 14(1): 263.
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Whole genome sequence of the treponema fribourg-blanc: unspecified simian isolate is highly similar to the yaws subspecies.  Zobaníková M, Strouhal M, Mikalová L, Cejková D, Ambrožová L, Pospíšilová P, Fulton LL, Chen L, Sodergren E, Weinstock GM, Smajs D.  (2013) PLoS Negl Trop Dis 7(4): e2172.
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Molecular and Immunological Characterization of Ragweed (Ambrosia artemisiifolia L.) Pollen after Exposure of the Plants to Elevated Ozone over a Whole Growing Season.  Kanter U, Heller W, Durner J, Winkler JB, Engel M, Behrendt H, Holzinger A, Braun P, Hauser M, Ferreira F, Mayer K, Pfeifer M, Ernst D.  (2013) PLoS One 8(4): e61518.
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Identification of genes and pathways related to phenol degradation in metagenomic libraries from petroleum refinery wastewater.  Silva CC, Hayden H, Sawbridge T, Mele P, De Paula SO, Silva LC, Vidigal PM, Vicentini R, Sousa MP, Torres AP, Santiago VM, Oliveira VM.  (2013) PLoS One 8(4): e61811.
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Whole genome sequence of the Treponema Fribourg-Blanc: unspecified simian isolate is highly similar to the yaws subspecies.  Zobaníková M, Strouhal M, Mikalová L, Cejková D, Ambrožová L, Pospíšilová P, Fulton LL, Chen L, Sodergren E, Weinstock GM, Smajs D.  (2013) PLoS Negl Trop Dis 7(4): e2172.
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Next-generation sequencing to inventory taxonomic diversity in eukaryotic communities: a test for freshwater diatoms.  Kermarrec L, Franc A, Rimet F, Chaumeil P, Humbert JF, Bouchez A.  (2013) Mol Ecol Resour ePub:
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Enhanced de novo assembly of high throughput pyrosequencing data using whole genome mapping.  Onmus-Leone F, Hang J, Clifford RJ, Yang Y, Riley MC, Kuschner RA, Waterman PE, Lesho EP.  (2013) PLoS One 8(4): e61762.
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Male circumcision significantly reduces prevalence and load of genital anaerobic bacteria.  Liu CM, Hungate BA, Tobian AA, Serwadda D, Ravel J, Lester R, Kigozi G, Aziz M, Galiwango RM, Nalugoda F, Contente-Cuomo TL, Wawer MJ, Keim P, Gray RH, Price LB.  (2013) MBio 4(2): pii: e00076-13.
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Diversity and heritability of the maize rhizosphere microbiome under field conditions.  Peiffer JA, Spor A, Koren O, Jin Z, Tringe SG, Dangl JL, Buckler ES, Ley RE.  (2013) PNAS 110(16): 6548-53.
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Cyanobacterial diversity in the hot spring, pelagic and benthic habitats of a tropical soda lake.  Dadheech PK, Glöckner G, Casper P, Kotut K, Mazzoni CJ, Mbedi S, Krienitz L.  (2013) FEMS Microbiol Ecol ePub:
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Changes in the Rumen Epimural Bacterial Diversity of Beef Cattle as Affected by Diet and Induced Ruminal Acidosis.  Petri RM, Schwaiger T, Penner GB, Beauchemin KA, Forster RJ, McKinnon JJ, McAllister TA.  (2013) Appl Environ Microbiol ePub:
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Transcriptome analysis reveals ginsenosides biosynthetic genes, microRNAs and simple sequence repeats in Panax ginseng C. A. Meyer.  Li C, Zhu Y, Guo X, Sun C, Luo H, Song J, Li Y, Wang L, Qian J, Chen S.  (2013) BMC Genomics 14(1): 245.
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Evidence for anticipation in Beckwith-Wiedemann syndrome.  Berland S, Appelbäck M, Bruland O, Beygo J, Buiting K, Mackay DJ, Karen Temple I, Houge G.  (2013) Eur J Hum Genet ePub:
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Transcriptional profiling of bud dormancy induction and release in oak by next-generation sequencing.  Ueno S, Klopp C, Leplé JC, Derory J, Noirot C, Léger V, Prince E, Kremer A, Plomion C, Le Provost G.  (2013) BMC Genomics 14: 236.
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Transcriptional profiling of bud dormancy induction and release in oak by next-generation sequencing.  Ueno S, Klopp C, Leplé JC, Derory J, Noirot C, Léger V, Prince E, Kremer A, Plomion C, Le Provost G.  (2013) BMC Genomics 14(1): 236.
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High throughput transcriptome analysis of lipid metabolism in Syrian hamster liver in absence of an annotated genome.  Schmucki R, Berrera M, Küng E, Lee S, Thasler WE, Grüner S, Ebeling M, Certa U.  (2013) BMC Genomics 14(1): 237.
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De novo Sequence Assembly and Characterization of Lycoris aurea Transcriptome Using GS FLX Titanium Platform of 454 Pyrosequencing.  Wang R, Xu S, Jiang Y, Jiang J, Li X, Liang L, He J, Peng F, Xia B.  (2013) PLoS One 8(4): e60449.
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Robustness of Gut Microbiota of Healthy Adults in Response to Probiotic Intervention Revealed by High-Throughput Pyrosequencing.  Kim SW, Suda W, Kim S, Oshima K, Fukuda S, Ohno H, Morita H, Hattori M.  (2013) DNA Research ePub:
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Plasmodium falciparum-like parasites infecting wild apes in southern Cameroon do not represent a recurrent source of human malaria.  Sundararaman SA, Liu W, Keele BF, Learn GH, Bittinger K, Mouacha F, Ahuka-Mundeke S, Manske M, Sherrill-Mix S, Li Y, Malenke JA, Delaporte E, Laurent C, Mpoudi Ngole E, Kwiatkowski DP, Shaw GM, Rayner JC, Peeters M, Sharp PM, Bushman FD, Hahn BH. (2013) PNAS ePub:
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Pyrosequencing of environmental soil samples reveals biodiversity of the Phytophthora resident community in chestnut forests.  Vannini A, Bruni N, Tomassini A, Franceschini S, Vettraino AM.  (2013) FEMS Micrbiol Ecol ePub:
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Pyrosequencing Analysis of the Bacterial Community in Drinking Water Wells.  Navarro-Noya YE, Suárez-Arriaga MC, Rojas-Valdes A, Montoya-Ciriaco NM, Gómez-Acata S, Fernández-Luqueńo F, Dendooven L.  (2013) Microb Ecol ePub:
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Clinical measures of disease in adult non-CF bronchiectasis correlate with airway microbiota composition.  Rogers GB, van der Gast CJ, Cuthbertson L, Thomson SK, Bruce KD, Martin ML, Serisier DJ.  (2013) Thorax ePub:
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Bacterial communities in tetrachloroethene-polluted groundwaters: A case study.  Kotik M, Davidová A, Voříšková J, Baldrian P.  (2013) Sci Total Environ 454-455C: 517-527.
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Bacterial population in intestines of the black tiger shrimp (Penaeus monodon) under different growth stages.  Rungrassamee W, Klanchui A, Chaiyapechara S, Maibunkaew S, Tangphatsornruang S, Jiravanichpaisal P, Karoonuthaisiri N.  (2013) PLoS One 8(4): e60802.
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WNT1 Mutations in Families Affected by Moderately Severe and Progressive Recessive Osteogenesis Imperfecta.  Pyott SM, Tran TT, Leistritz DF, Pepin MG, Mendelsohn NJ, Temme RT, Fernandez BA, Elsayed SM, Elsobky E, Verma I, Nair S, Turner EH, Smith JD, Jarvik GP, Byers PH.  (2013) Am J Hum Genet 92(4): 590-7.
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Mutations in LARS2, Encoding Mitochondrial Leucyl-tRNA Synthetase, Lead to Premature Ovarian Failure and Hearing Loss in Perrault Syndrome.  Pierce SB, Gersak K, Michaelson-Cohen R, Walsh T, Lee MK, Malach D, Klevit RE, King MC, Levy-Lahad E (2013) Am J Hum Genet 92(4): 614-20.
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A Comparison of the Olfactory Gene Repertoires of Adults and Larvae in the Noctuid Moth Spodoptera littoralis.  Poivet E, Gallot A, Montagné N, Glaser N, Legeai F, Jacquin-Joly E.  (2013) PLoS One 8(4): e60263.
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Genomic Analysis of Dairy Starter Culture Streptococcus thermophilus MTCC 5461.  Prajapati JB, Nathani NM, Patel AK, Senan S, Joshi CG.  (2013) J Microbiol Biotechnol 23(4): 459-66.
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Sequencing of the Dutch Elm Disease Fungus Genome Using the Roche/454 GS-FLX Titanium System in a Comparison of Multiple Genomics Core Facilities.  Forgetta V, Leveque G, Dias J, Grove D, Lyons R Jr, Genik S, Wright C, Singh S, Peterson N, Zianni M, Kieleczawa J, Steen R, Perera A, Bintzler D, Adams S, Hintz W, Jacobi V, Bernier L, Levesque R, Dewar K.  (2013) J Biomol Tech 24(1): 39-49.
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The structure of microbial community and degradation of diatoms in the deep near-bottom layer of lake baikal.  Zakharova YR, Galachyants YP, Kurilkina MI, Likhoshvay AV, Petrova DP, Shishlyannikov SM, Ravin NV, Mardanov AV, Beletsky AV, Likhoshway YV.  (2013) PLoS One 8(4): e59977.
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A preliminary metagenomic study of puer tea during pile fermentation.  Lyu C, Chen C, Ge F, Liu D, Zhao S, Chen D.  (2013) J Sci Food Agric ePub:
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The mitochondrial and autosomal mutation landscapes of prostate cancer.  Lindberg J, Mills IG, Klevebring D, Liu W, Neiman M, Xu J, Wikström P, Wiklund P, Wiklund F, Egevad L, Grönberg H.  (2013) Eur Urol 63(4): 702-8.
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Use of microarray hybrid capture and next-generation sequencing to identify the anatomy of a transgene.  Dubose AJ, Lichtenstein ST, Narisu N, Bonnycastle LL, Swift AJ, Chines PS, Collins FS.  (2013) Nucleic Acids Research 41(6): e70.
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Exome sequencing by targeted enrichment.  Clark MJ, Chen R, Snyder M.  (2013) Curr Protocols Mol Bio Chapter 7: Unit7.12.
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Temporal stability of the mouse gut microbiota in relation to innate and adaptive immunity.  Dimitriu PA, Boyce G, Samarakoon A, Hartmann M, Johnson P, Mohn WW.  (2013) Envion Microbiol Rep 5(2): 200-10.
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Temperature-driven shifts in the epibiotic bacterial community composition of the brown macroalga Fucus vesiculosus.  Stratil SB, Neulinger SC, Knecht H, Friedrichs AK, Wahl M.  (2013) Microbiologyopen 2(2): 338-49.
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The versatile in situ gene expression of an Epsilonproteobacteria-dominated biofilm from a hydrothermal chimney.  Dahle H, Roalkvam I, Thorseth IH, Pedersen RB, Steen IH.  (2013) Environ Microbiol Rep 5(2): 282-90.
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Comparative characterization of transfection- and infection-derived simian immunodeficiency virus challenge stocks for in vivo nonhuman primate studies.  Del Prete GQ, Scarlotta M, Newman L, Reid C, Parodi LM, Roser JD, Oswald K, Marx PA, Miller CJ, Desrosiers RC, Barouch DH, Pal R, Piatak M Jr, Chertova E, Giavedoni LD, O'Connor DH, Lifson JD, Keele BF.  (2013) J Virology 87(8): 4584-95.
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Pyrosequencing reveals high-temperature cellulolytic microbial consortia in great boiling spring after in situ lignocellulose enrichment.  Peacock JP, Cole JK, Murugapiran SK, Dodsworth JA, Fisher JC, Moser DP, Hedlund BP.  (2013) PLoS One 8(3): e59927.
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Clustering and Alignment of Polymorphic Sequences for HLA-DRB1 Genotyping.  Ringquist S, Bellone G, Lu Y, Roeder K, Trucco M.  (2013) PLoS One 8(3): e59835.
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Detection of novel genetic variation in autosomal dominant retinitis pigmentosa.  Borrŕs E, de Sousa Dias M, Hernan I, Pascual B, Mańé B, Gamundi M, Delás B, Carballo M.  (2013) Clin Genetics ePub:
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Molecular investigation of bacterial communities on the inner and outer surfaces of peripheral venous catheters.  Zhang L, Morrison M, Nimmo GR, Sriprakash KS, Mondot S, Gowardman JR, George N, Marsh N, Rickard CM.  (2013) Eur J Clin Microbiol Infect Dis ePub:
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Pyrosequencing assessment of prokaryotic and eukaryotic diversity in biofilm communities from a French river.  Bricheux G, Morin L, Le Moal G, Coffe G, Balestrino D, Charbonnel N, Bohatier J, Forestier C.  (2013) Microbiologyopen ePub:
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From design to screening: a new antimicrobial Peptide discovery pipeline.  Guralp SA, Murgha YE, Rouillard JM, Gulari E.  (2013) PLoS One 8(3): e59305.
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Fecal microbiota diversity in survivors of adolescent/young adult Hodgkin lymphoma: a study of twins.  Cozen W, Yu G, Gail MH, Ridaura VK, Nathwani BN, Hwang AE, Hamilton AS, Mack TM, Gordon JI, Goedert JJ.  (2013) Br J Cancer 108(5): 1163-7.
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Mouse Paneth cell antimicrobial function is independent of Nod2.  Shanahan MT, Carroll IM, Grossniklaus E, White A, von Furstenberg RJ, Barner R, Fodor AA, Henning SJ, Sartor RB, Gulati AS. (2013) Gut ePub:
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Deep sequencing for de novo construction of a marine fish (Sparus aurata) transcriptome database with a large coverage of protein-coding transcripts.  Calduch-Giner JA, Bermejo-Nogales A, Benedito-Palos L, Estensoro I, Ballester-Lozano G, Sitjŕ-Bobadilla A, Pérez-Sánchez J.  (2013) BMC Genomics 14(1): 178.
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A combined strategy involving Sanger and 454 pyrosequencing increases genomic resources to aid in the management of reproduction, disease control and genetic selection in the turbot (Scophthalmus maximus).  Ribas L, Pardo BG, Fernández C, Alvarez-Diós JA, Gómez-Tato A, Quiroga MI, Planas JV, Sitjŕ-Bobadilla A, Martínez P, Piferrer F. (2013) BMC Genomics 14(1): 180.
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Accurate human papillomavirus genotyping by 454 pyrosequencing.  Militello V, Lavezzo E, Costanzi G, Franchin E, Di Camillo B, Toppo S, Palů G, Barzon L.  (2013) Clin Microbiol Infect ePub:
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Effects of amoxicillin treatment on the salivary microbiota in children with acute otitis media.  Lazarevic V, Manzano S, Gaďa N, Girard M, Whiteson K, Hibbs J, François P, Gervaix A, Schrenzel J.  (2013) Clin Microbiol Infect ePub:
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Influence of pretreated activated sludge for electricity generation in microbial fuel cell application.  Mohd Yusoff MZ, Hu A, Feng C, Maeda T, Shirai Y, Hassan MA, Yu CP.  (2013) Bioresour Technol ePub:
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The Mitochondrion-Like Organelle of Trimastix pyriformis Contains the Complete Glycine Cleavage System.  Zubáčová Z, Novák L, Bublíková J, Vacek V, Fousek J, Rídl J, Tachezy J, Doležal P, Vlček C, Hampl V.  (2013) PLoS One 8(3): e55417.
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Loss in microbial diversity affects nitrogen cycling in soil.  Philippot L, Spor A, Hénault C, Bru D, Bizouard F, Jones CM, Sarr A, Maron PA.  (2013) ISME J ePub:
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Increased detection rates of EGFR and KRAS mutations in NSCLC specimens with low tumour cell content by 454 deep sequencing.  Moskalev EA, Stöhr R, Rieker R, Hebele S, Fuchs F, Sirbu H, Mastitsky SE, Boltze C, König H, Agaimy A, Hartmann A, Haller F. (2013) Virchows Arch ePub:
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Selection of an aptamer antidote to the anticoagulant drug bivalirudin.  Martin JA, Parekh P, Kim Y, Morey TE, Sefah K, Gravenstein N, Dennis DM, Tan W.  (2013) PLoS One 8(3): e57341.
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Next Generation Sequencing Reveals the Association of DRB3*02:02 with Type I Diabetes.  Erlich HA, Valdes AM, McDevitt S, Simen BB, Blake LA, McGowan KR, Todd JA, Rich SS, Noble J.  (2013) Diabetes ePub:
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Transcriptome analysis of the bloodstream stage from the parasite Trypanosoma vivax.  Greif G, de Leon MP, Lamolle G, Rodriguez M, Pińeyro D, Tavares-Marques LM, Reyna-Bello A, Robello C, Valin FA.  (2013) BMC Genomics 14(1): 149.
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Microbial secondary succession in soil microcosms of a desert oasis in the Cuatro Cienegas Basin, Mexico.  López-Lozano NE, Heidelberg KB, Nelson WC, García-Oliva F, Eguiarte LE, Souza V.  (2013) Peer K ePub:
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Shifts in microbial community composition and function in the acidification of a lead/zinc mine tailings.  Chen LX, Li JT, Chen YT, Huang LN, Hua ZS, Hu M, Shu WS.  (2013) Environ Microbiol ePub:
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Molecular analysis of transcription start sites of separate copies of the suffix short retroelement in genome of Drosophila.  Zenina OS, Fedoseeva DM, Kretova OV, Tchurikov NA.  (2013) Dokl Biochem Biophys. 449: 112-5.
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Whole-exome sequencing reveals somatic mutations in HRAS and KRAS, which cause nevus sebaceus.  Levinsohn JL, Tian LC, Boyden LM, McNiff JM, Narayan D, Loring ES, Yun D, Sugarman JL, Overton JD, Mane SM, Lifton RP, Paller AS, Wagner AM, Antaya RJ, Choate KA.  (2013) J Invest Dermatol 133(3): 827-30.
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Composition of the stool microbiotas of infants fed goat milk-formula in comparison to cow milk-based formula, or breast milk.  Tannock GW, Lawley B, Munro K, Pathmanathan SG, Zhou SJ, Makrides M, Gibson RA, Sullivan T, Prosser CG, Lowry D, Hodgkinson AJ.  (2013) Appl Environ Microbiol ePub:
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High throughput HLA genotyping using 454 sequencing and the Fluidigm Access Array™ system for simplified amplicon library preparation.  Moonsamy PV, Williams T, Bonella P, Holcomb CL, Höglund BN, Hillman G, Goodridge D, Turenchalk GS, Blake LA, Daigle DA, Simen BB, Hamilton A, May AP, Erlich HA.  (2013) Tissue Antigens 12(1): 141-9.
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Transcriptome pyrosequencing of the Antarctic brittle star Ophionotus victoriae.  Burns G, Thorndyke MC, Peck LS, Clark MS.  (2013) Mar Genomics 9: 9-15.
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Missense mutation in the ATPase, aminophospholipid transporter protein ATP8A2 is associated with cerebellar atrophy and quadrupedal locomotion.  Onat OE, Gulsuner S, Bilguvar K, Nazli Basak A, Topaloglu H, Tan M, Tan U, Gunel M, Ozcelik T.  (2013) Eur J Hum Genet. 21(3): 281-5
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De novo transcriptomic resources for two sibling species of moths: Ostrinia nubilalis and O. scapulalis.  Gschloessl B, Beyne E, Audiot P, Bourguet D, Streiff R. (2013) BMC Res Notes 6: 73.
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454 Pyrosequencing Analysis on Faecal Samples from a Randomized DBPC Trial of Colicky Infants Treated with Lactobacillus reuteri DSM 17938.  Roos S, Dicksved J, Tarasco V, Locatelli E, Ricceri F, Grandin U, Savino F.  (2013) PLoS One 8(2): e56710.
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Geographic distance and ecosystem size determine the distribution of smallest protists in lacustrine ecosystems.  Lepčre C, Domaizon I, Taďb N, Mangot JF, Bronner G, Boucher D, Debroas D.  (2013) FEMS Microbiol Ecol ePub:
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Identification and functional analysis of cytochrome P450 complement in Streptomyces virginiae IBL14.  Li ZZ, Li XF, Yang W, Dong X, Yu J, Zhu SL, Li M, Xie L, Tong WY.  (2013) BMC Genomics 14(1): 130.
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Fecal Microbiome and Volatile Organic Compound Metabolome in Obese Humans with Nonalcoholic Fatty Liver Disease.  Raman M, Ahmed I, Gillevet PM, Probert CS, Ratcliffe NM, Smith S, Greenwood R, Sikaroodi M, Lam V, Crotty P, Bailey J, Myers RP, Rioux KP.  (2013) Clin Gastroenterol Hepatol ePub:
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Absence of major histocompatibility complex class II mediated immunity in pipefish, Syngnathus typhle: evidence from deep transcriptome sequencing.  Haase D, Roth O, Kalbe M, Schmiedeskamp G, Scharsack JP, Rosenstiel P, Reusch TB.  (2013) Biol Lett 9(2): 20130044.
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Distribution and abundance of Spirochaetes in full-scale anaerobic digesters.  Lee SH, Park JH, Kang HJ, Lee YH, Lee TJ, Park HD.  (2013) Bioresouc Technol ePub:
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Unexpected Diversity during Community Succession in the Apple Flower Microbiome.  Shade A, McManus PS, Handelsman J.  (2013) MBio 4(2): pii: e00602-12.
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Effects of Different Complementary Feeding Regimens on Iron Status and Enteric Microbiota in Breastfed Infants.  Krebs NF, Sherlock LG, Westcott J, Culbertson D, Hambidge KM, Feazel LM, Robertson CE, Frank DN.  (2013) J Pediatr ePub:
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Comparison of microbial community structure in untreated wastewater from different geographic locales.  Shanks OC, Newton RJ, Kelty CA, Huse SM, Sogin ML, McLellan SL.  (2013) Appl Environ Microbiol ePub:
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A novel nonwoven hybrid bioreactor (NWHBR) for enhancing simultaneous nitrification and denitrification.  Meng F, Wang Y, Huang LN, Li J, Jiang F, Li S, Chen GH.  (2013) Biotechnol Bioeng ePub:
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Exploring the Dynamic Core Microbiome of Plaque Microbiota during Head-and-Neck Radiotherapy Using Pyrosequencing.  Hu YJ, Shao ZY, Wang Q, Jiang YT, Ma R, Tang ZS, Liu Z, Liang JP, Huang ZW.  (2013) PLoS One 8(2): e56343.
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454 Pyrosequencing Analysis of Fungal Assemblages from Geographically Distant, Disparate Soils Reveals Spatial Patterning and a Core Mycobiome  Alberto Orgiazzi, Valeria Bianciotto, Paola Bonfante, Stefania Daghino, Stefano Ghignone, Alexandra Lazzari, Erica Lumini, Antonietta Mello, Chiara Napoli, Silvia Perotto, Alfredo Vizzini, Simonetta Bagella, Claude Murat, and Mariangela Girlanda (2013) Diversity 5(1): 73-98.
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Global sampling of plant roots expands the described molecular diversity of arbuscular mycorrhizal fungi.  Opik M, Zobel M, Cantero JJ, Davison J, Facelli JM, Hiiesalu I, Jairus T, Kalwij JM, Koorem K, Leal ME, Liira J, Metsis M, Neshataeva V, Paal J, Phosri C, Pőlme S, Reier U, Saks U, Schimann H, Thiéry O, Vasar M, Moora M.  (2013) Mycorrhiza ePub:
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A de novo assembly of the newt transcriptome combined with proteomic validation identifies new protein families expressed during tissue regeneration.  Looso M, Preussner J, Sousounis K, Bruckskotten M, Michel CS, Lignelli E, Reinhardt R, Hoeffner S, Krueger M, Tsonis PA, Borchardt T, Braun T.  (2013) Genome Biology 14(2): R16.
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Multiple KRAS Mutations in Pancreatic Adenocarcinoma: Molecular Features of Neoplastic Clones Indicate the Selection of Divergent Populations of Tumor Cells.  Visani M, de Biase D, Baccarini P, Fabbri C, Polifemo AM, Zanini N, Pession A, Tallini G.  (2013) Int J Surg Pathol ePub:
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Analysis of 454 sequencing error rate, error sources, and artifact recombination for detection of Low-frequency drug resistance mutations in HIV-1 DNA.  Shao W, Boltz VF, Spindler JE, Kearney MF, Maldarelli F, Mellors JW, Stewart C, Volfovsky N, Levitsky A, Stephens RM, Coffin JM.  (2013) Retrovirology 10(1): 18.
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Comparative Characterization of Transfection- and Infection-Derived SIV Challenge Stocks for In Vivo Non-Human Primate Studies.  Del Prete GQ, Scarlotta M, Newman L, Reid C, Parodi LM, Roser JD, Oswald K, Marx PA, Miller CJ, Desrosiers RC, Barouch DH, Pal R, Piatak M Jr, Chertova E, Giavedoni LD, O'Connor DH, Lifson JD, Keele BF.  (2013) J Virology ePub:
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Chicken faecal microbiota and disturbances induced by single or repeated therapy with tetracycline and streptomycin.  Videnska P, Faldynova M, Juricova H, Babak V, Sisak F, Havlickova H, Rychlik I.  (2013) BMC Vet Res 9: 30.
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Activation of the jasmonic Acid plant defence pathway alters the composition of rhizosphere bacterial communities.  Carvalhais LC, Dennis PG, Badri DV, Tyson GW, Vivanco JM, Schenk PM.  (2013) PLoS One 8(2): e56457.
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Microbiome of the upper troposphere: species composition and prevalence, effects of tropical storms, and atmospheric implications.  DeLeon-Rodriguez N, Lathem TL, Rodriguez-R LM, Barazesh JM, Anderson BE, Beyersdorf AJ, Ziemba LD, Bergin M, Nenes A, Konstantinidis KT. (2013) PNAS 110(7): 2575-80.
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Phylogenetics and differentiation of salmonella newport lineages by whole genome sequencing.  Cao G, Meng J, Strain E, Stones R, Pettengill J, Zhao S, McDermott P, Brown E, Allard M.  (2013) PLoS One 8(2): e55687.
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Phylogenetics and differentiation of salmonella newport lineages by whole genome sequencing.  Cao G, Meng J, Strain E, Stones R, Pettengill J, Zhao S, McDermott P, Brown E, Allard M.  (2013) PLoS One 8(2): e55687.
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Simultaneous amplicon sequencing to explore co-occurrence patterns of bacterial, archaeal and eukaryotic microorganisms in rumen microbial communities.  Kittelmann S, Seedorf H, Walters WA, Clemente JC, Knight R, Gordon JI, Janssen PH.  (2013) PLoS One 8(2): e47879.
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Simultaneous amplicon sequencing to explore co-occurrence patterns of bacterial, archaeal and eukaryotic microorganisms in rumen microbial communities.  Kittelmann S, Seedorf H, Walters WA, Clemente JC, Knight R, Gordon JI, Janssen PH.  (2013) PLoS One 8(2): e47879.
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Pyrosequencing dried blood spots reveals differences in HIV drug resistance between treatment naďve and experienced patients.  Ji H, Li Y, Liang B, Pilon R, MacPherson P, Bergeron M, Kim J, Graham M, Van Domselaar G, Sandstrom P, Brooks J.  (2013) PLoS One 8(2): e56170.
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An integrated transcriptome-wide analysis of cave and surface dwelling Astyanax mexicanus.  Gross JB, Furterer A, Carlson BM, Stahl BA.  (2013) PLoS One 8(2): e55659.
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Comparison of sequencing platforms for single nucleotide variant calls in a human sample.  Ratan A, Miller W, Guillory J, Stinson J, Seshagiri S, Schuster SC.  (2013) PLoS One 8(2): e55089.
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Merga JY, Williams NJ, Miller WG, Leatherbarrow AJ, Bennett M, Hall N, Ashelford KE, Winstanley C.  Exploring the Diversity of Arcobacter butzleri from Cattle in the UK Using MLST and Whole Genome Sequencing. (2013) PLoS One 8(2): e55240.
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Spatiotemporal reconstruction of the Aquilegia rapid radiation through next-generation sequencing of rapidly evolving cpDNA regions.  Fior S, Li M, Oxelman B, Viola R, Hodges SA, Ometto L, Varotto C.  (2013) New Phytologist ePub:
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Evaluating a LM-PCR and pyrosequencing method for the detection of clonal contribution in polyclonal retrovirally transduced samples.  Brugman MH, Suerth JD, Rothe M, Suerbaum S, Schambach A, Modlich U, Kustikova O, Baum C.  (2013) Hum Gene Ther Methods ePub:
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Differences in fungi present in induced sputum samples from asthma patients and non-atopic controls: a community based case control study.  van Woerden HC, Gregory C, Brown R, Marchesi JR, Hoogendoorn B, Matthews IP.  (2013) BMC Infec Dis 13: 69.
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Comparative metagenomic analysis of microcosm structures and lignocellulolytic enzyme systems of symbiotic biomass-degrading consortia.  Wongwilaiwalin S, Laothanachareon T, Mhuantong W, Tangphatsornruang S, Eurwilaichitr L, Igarashi Y, Champreda V.  (2013) Appl Microbiol Biotechnol ePub:
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Uncovering symbiont-driven genetic diversity across North American pea aphids.  Russell JA, Weldon S, Smith AH, Kim KL, Hu Y, Lukasik P, Doll S, Anastopoulos I, Novin M, Oliver KM.  (2013) Mol Ecol ePub:
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Impacts of inundation and drought on eukaryote biodiversity in semi-arid floodplain soils.  Baldwin DS, Colloff MJ, Rees GN, Chariton AA, Watson GO, Court LN, Hartley DM, Morgan MJ, King AJ, Wilson JS, Hodda M, Hardy CM.  (2013) Mol Ecol ePub:
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Metagenomic profile of gut microbiota in children during cholera and recovery  Monira S, Nakamura S, Gotoh K, Izutsu K, Watanabe H, Alam NH, Nakaya T, Horii T, Ali SI, Iida T, Alam M. (2013) Gut Pathogens 5(1): 1.
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Bacterial diversity of the rock-water interface in an East Antarctic freshwater ecosystem, Lake Tawani(P).  Huang JP, Swain AK, Thacker RW, Ravindra R, Andersen DT, Bej AK.  (2013) Aquat Biosyst 9(1): 4.
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Allele Identification for Transcriptome-Based Population Genomics in the Invasive Plant Centaurea solstitialis.  Dlugosch KM, Lai Z, Bonin A, Hierro J, Rieseberg LH.  (2013) G3 (Bethesda) 3(2): 359-67.
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Clinical and histopathological study of Charcot-Marie-Tooth neuropathy with a novel S90W mutation in BSCL2.  Choi BO, Park MH, Chung KW, Woo HM, Koo H, Chung HK, Choi KG, Park KD, Lee HJ, Hyun YS, Koo SK.  (2013) Neurogenetics 14(1): 35-42.
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ENU mutagenesis identifies the first mouse mutants reproducing human â-thalassemia at the genomic level.  Brown FC, Scott N, Rank G, Collinge JE, Vadolas J, Vickaryous N, Whitelaw N, Whitelaw E, Kile BT, Jane SM, Curtis DJ.  (2013) Blood Cells Mol Dis 50(2): 86-92.
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Detecting genes for variation in parasite burden and immunological traits in a wild population: testing the candidate gene approach.  Brown EA, Pilkington JG, Nussey DH, Watt KA, Hayward AD, Tucker R, Graham AL, Paterson S, Beraldi D, Pemberton JM, Slate J.  (2013) Mol Ecol 22(3): 757-73.
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The molecular function and clinical phenotype of partial deletions of the IGF2/H19 imprinting control region depends on the spatial arrangement of the remaining CTCF-binding sites.  Beygo J, Citro V, Sparago A, De Crescenzo A, Cerrato F, Heitmann M, Rademacher K, Guala A, Enklaar T, Anichini C, Cirillo Silengo M, Graf N, Prawitt D, Cubellis MV, Horsthemke B, Buiting K, Riccio A. (2013) Hum Mol Genet 22(3): 544-57.
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Pyrosequencing the canine faecal microbiota: breadth and depth of biodiversity.  Hand D, Wallis C, Colyer A, Penn CW.  (2013) PLoS One 8(1): e53115.
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Detection of novel viruses in porcine fecal samples from China.  Yu JM, Li JS, Ao YY, Duan ZJ. (2013) Virology 10(1): 39.
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Characterizing the emergence and persistence of drug resistant mutations in HIV-1 subtype C infections using 454 ultra deep pyrosequencing.  Bansode V, McCormack GP, Crampin AC, Ngwira B, Shrestha RK, French N, Glynn JR, Travers SA. (2013) BMC Infec Dis 13(1): 52.
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Comparison of Population and 454 "Deep" Sequence Analysis for HIV-1 Tropism versus the Original Trofile Assay in non-B Subtypes.  Lee GQ, Harrigan PR, Dong W, Poon A, Heera J, Demarest J, Rinehart A, Chapman D, Valdez H, Portsmouth S. (2013) AIDS Res Hum Retroviruses ePub:
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Transcriptome Exploration in Leymus chinensis under Saline-Alkaline Treatment Using 454 Pyrosequencing.  Sun Y, Wang F, Wang N, Dong Y, Liu Q, Zhao L, Chen H, Liu W, Yin H, Zhang X, Yuan Y, Li H. (2013) PLoS One 8(1): e53632.
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Development of microsatellite markers for the Neotropical endemic Brazilian Guanabara frog, Euparkerella brasiliensis, through 454 shotgun pyrosequencing.  Fusinatto LA, Lopes S, Silva-Ferreira A, Alexandrino J, Haddad CF, Rocha CF, Sequeira F.  (2013) Genet Mol Res 12(1): 230-4.
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Sputum Microbiota in Tuberculosis as Revealed by 16S rRNA Pyrosequencing.  Cheung MK, Lam WY, Fung WY, Law PT, Au CH, Nong W, Kam KM, Kwan HS, Tsui SK.  (2013) PLoS One 8(1): e54574.
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Bacterial Diversity in Two Neonatal Intensive Care Units (NICUs).  Hewitt KM, Mannino FL, Gonzalez A, Chase JH, Caporaso JG, Knight R, Kelley ST.  (2013) PLoS One 8(1): e54703.
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Characterization of the Vaginal Micro- and Mycobiome in Asymptomatic Reproductive-Age Estonian Women.  Drell T, Lillsaar T, Tummeleht L, Simm J, Aaspőllu A, Väin E, Saarma I, Salumets A, Donders GG, Metsis M. (2013) PLoS One 8(1): e54379.
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Comparative metagenomic and rRNA microbial diversity characterization using archaeal and bacterial synthetic communities.  Shakya M, Quince C, Campbell JH, Yang ZK, Schadt CW, Podar M.  (2013) Environ Microbiol ePub:
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Complete chloroplast genome sequence of Magnolia grandiflora and comparative analysis with related species.  Li X, Gao H, Wang Y, Song J, Henry R, Wu H, Hu Z, Yao H, Luo H, Luo K, Pan H, Chen S. (2013) Sci China Life Sci. ePub:
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Identification of the hevea brasiliensis AP2/ERF superfamily by RNA sequencing.  Duan C, Argout X, Gébelin V, Summo M, Dufayard JF, Leclercq J, Hadi K, Piyatrakul P, Pirrello J, Rio M, Champion A, Montoro P. (2013) BMC Genomics 14(1): 30.
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Single nucleotide polymorphism isolated from a novel EST dataset in garden asparagus (Asparagus officinalis L.).  Mercati F, Riccardi P, Leebens-Mack J, Abenavoli MR, Falavigna A, Sunseri F.  (2013) Plant Sci 203-204: 115-23.
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A pyrosequencing-based metagenomic study of methane-producing microbial community in solid-state biogas reactor.  Li A, Chu YN, Wang X, Ren L, Yu J, Liu X, Yan J, Zhang L, Wu S, Li S. (2013) Biotechnol Biofuels 6(1): 3.
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TREM2 variants in Alzheimer's disease.  Guerreiro R et al. (2013) New England Journal of Medicine 368(2): 117-27.
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IgG4+ clones identified by next-generation sequencing dominate the b-cell receptor repertoire in IgG4-associated cholangitis.  de Buy Wenniger LJ, Doorenspleet ME, Klarenbeek PL, Verheij J, Baas F, Elferink RP, Tak PP, de Vries N, Beuers U. (2013) Hepatology ePub:
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The role of viral population diversity in adaptation of bovine coronavirus to new host environments.  Borucki MK, Allen JE, Chen-Harris H, Zemla A, Vanier G, Mabery S, Torres C, Hullinger P, Slezak T. (2013) PLoS One 8(1): e52752.
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A novel salt-induced gene from sheepgrass, LcSAIN2, enhances salt tolerance in transgenic Arabidopsis.  Li X, Gao Q, Liang Y, Ma T, Cheng L, Qi D, Liu H, Xu X, Chen S, Liu G. (2013) Plant Physiol Biochem 64C: 52-59.
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An EST database of the Caribbean fruit fly, Anastrepha suspensa (Diptera: Tephritidae).  Nirmala X, Schetelig MF, Yu F, Handler AM. (2013) Gene S0378-1119(12): 01516-8.
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Development of an integrated transcript sequence database and a gene expression atlas for gene discovery and analysis in switchgrass (Panicum virgatum L.).  Zhang JY, Lee YC, Torres-Jerez I, Wang M, Yin Y, Chou WC, He J, Shen H, Srivastava AC, Pennacchio C, Lindquist E, Grimwood J, Schmutz J, Xu Y, Sharma M, Sharma R, Bartley LE, Ronald PC, Saha MC, Dixon RA, Tang Y, Udvardi MK. (2013) Plant Journal ePub:
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Expressed sequence tag analysis of the emu (Dromaius novaehollandiae) pituitary by 454 GS Junior pyrosequencing.  Kim JE, Leung FC, Jiang J, Kwok AH, Bennett DC, Cheng KM. (2013) Poult Sci 92(1): 90-6.
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Influence of penicillin on microbial diversity of the cecal microbiota in broiler chickens.  Singh P, Karimi A, Devendra K, Waldroup PW, Cho KK, Kwon YM. (2013) Poult Sci 92(1): 272-6.
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Coaggregation occurs amongst bacteria within and between biofilms in domestic showerheads.  Vornhagen J, Stevens M, McCormick DW, Dowd SE, Eisenberg JN, Boles BR, Rickard AH. (2013) Biofouling 29(1): 53-68.
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Sequence capture and massively parallel sequencing to detect mutations associated with malignant hyperthermia.  Schiemann AH, Dürholt EM, Pollock N, Stowell KM.  (2013) Br J Anaesth 110(1): 122-7.
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Metagenomic analysis of subgingival microbiota following non-surgical periodontal therapy: a pilot study.  Laksmana T, Kittichotirat W, Huang Y, Chen W, Jorgensen M, Bumgarner R, Chen C. (2012) Open Dental J 6: 255-61.
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Characterization of transcriptomes from sexual and asexual lineages of a New Zealand snail (Potamopyrgus antipodarum).  Wilton PR, Sloan DB, Logsdon Jr JM, Doddapaneni H, Neiman M. (2012) Mol Ecol Resour ePub:
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SNP Design from 454 Sequencing of Podosphaera plantaginis Transcriptome Reveals a Genetically Diverse Pathogen Metapopulation with High Levels of Mixed-Genotype Infection.  Tollenaere C, Susi H, Nokso-Koivisto J, Koskinen P, Tack A, Auvinen P, Paulin L, Frilander MJ, Lehtonen R, Laine AL. (2012) PLoS One 7(12): e52492.
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Genomic basis of broad host range and environmental adaptability of Rhizobium tropici CIAT 899 and Rhizobium sp. PRF 81 which are used in inoculants for common bean (Phaseolus vulgaris L.).  Ormeńo-Orrillo E, Menna P, Almeida LG, Ollero FJ, Nicolás MF, Pains Rodrigues E, Shigueyoshi Nakatani A, Silva Batista JS, Oliveira Chueire LM, Souza RC, Ribeiro Vasconcelos AT, Megías M, Hungria M, Martínez-Romero E. (2012) BMC Genomics 13: 735.
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Next generation sequencing analysis reveals a relationship between rDNA unit diversity and locus number in Nicotiana diploids.  Matyá Ek R, Renny-Byfield S, Fulne Ek J, Macas JI, Grandbastien MA, Nichols R, Leitch A, Kova Ík A. (2012) BMC Genomics 13(1): 722.
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Single nucleotide polymorphism discovery in cutthroat trout subspecies using genome reduction, barcoding, and 454 pyro-sequencing.  Houston DD, Elzinga DB, Maughan PJ, Smith SM, Kauwe JS, Evans RP, Stinger RB, Shiozawa DK. (2012) BMC Genomics 13(1): 724.
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Mutation spectrum of Drosophila CNVs revealed by breakpoint sequencing.  Cardoso-Moreira M, Arguello JR, Clark AG. (2012) Genome Biology 13(12): R119.
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Establishing a relationship between bacteria in the human gut and Complex Regional Pain Syndrome.  Reichenberger ER, Alexander GM, Perreault MJ, Russell JA, Schwartzman RJ, Hershberg U, Rosen G. (2012) Brain, Behavior, and Immunity pii: S0889-1591(12): 00535-1.
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16S rRNA Terminal Restriction Fragment Length Polymorphism for the Characterization of the Nasopharyngeal Microbiota.  Brugger SD, Frei L, Frey PM, Aebi S, Mühlemann K, Hilty M. (2012) PLoS One 7(12): e52241.
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Expression and characterization of the calcium-activated photoprotein from the ctenophore Bathocyroefosteri: Insights into light-sensitive photoproteins.  Powers ML, McDermott AG, Shaner NC, Haddock SH. (2012) Biochem Biophys Res Commun pii: S0006-291X(12): 02355-8.
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Microbial analysis of bite marks by sequence comparison of streptococcal DNA.  Kennedy DM, Stanton JA, García JA, Mason C, Rand CJ, Kieser JA, Tompkins GR. (2012) PLoS One 7(12): e51757.
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Low diversity in the mitogenome of sperm whales revealed by next-generation sequencing.  Alexander A, Steel D, Slikas B, Hoekzema K, Carraher C, Parks M, Cronn R, Baker CS. (2012) Genome Biol Evol ePub:
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Twice-Daily Application of HIV Microbicides Alter the Vaginal Microbio.  Ravel J, Gajer P, Li F, Mauck CK, Koenig SS, Sakamoto J, Motsinger-Reif AA, Doncel GF, Zeichner SL. (2012) MBio 3(6): pii: e00370-12.
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Effective Assessment of EGFR Mutation Status in Bronchoalveolar Lavago and Pleural Fluids by Next Generation Sequencing  Buttitta F, Felicioni L, Del Grammastro M, Filice G, Di Lorito A, Malatesta S, Viola P, Centi I, D'Antuono T, Zappacosta R, Rosini S, Cuccurullo F, Marchetti A. (2012) Clin Cancer Res ePub:
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Global biogeography of highly diverse protistan communities in soil.  Bates ST, Clemente JC, Flores GE, Walters WA, Parfrey LW, Knight R, Fierer N. (2012) ISME Journal ePub:
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Feasibility of using 454 pyrosequencing for studying quasispecies of the whole dengue viral genome.  Chin-Inmanu K, Suttitheptumrong A, Sangsrakru D, Tangphatsornruang S, Tragoonrung S, Malasit P, Tungpradabkul S, Suriyaphol P. (2012) BMC Genomics 13 Suppl: 7:S7.
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Pyrosequencing of Haliotis diversicolor Transcriptomes: Insights into Early Developmental Molluscan Gene Expression.  Huang ZX, Chen ZS, Ke CH, Zhao J, You WW, Zhang J, Dong WT, Chen J. (2012) PLoS One 7(12): e51279.
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Metagenomic analysis of a southern maritime antarctic soil.  Pearce DA, Newsham KK, Thorne MA, Calvo-Bado L, Krsek M, Laskaris P, Hodson A, Wellington EM. (2012) Front Microbiol ePub:
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In vitro Analysis of the Impact of Enrofloxacin Residues on the Human Intestinal Microbiota Using H-NMR Spectroscopy.  Ahn Y, Jung JY, Chung YH, Chae M, Jeon CO, Cerniglia CE. (2012) J Mol Microbiol Biotechnol 22(5): 317-325.
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Toward Animal Cell Culture-Based Influenza Vaccine Design: Viral Hemagglutinin N-Glycosylation Markedly Impacts Immunogenicity.  Hütter J, Rödig JV, Höper D, Seeberger PH, Reichl U, Rapp E, Lepenies B. (2012) J Immunology ePub:
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Rapid hepatitis C virus divergence among chronically infected individuals.  Cruz-Rivera M, Carpio-Pedroza JC, Escobar-Gutiérrez A, Lozano D, Vergara-Castaneda A, Rivera-Osorio P, Martinez-Guarneros A, Chacon CA, Fonseca-Coronado S, Vaughan G. (2012) J Clin Microbiol ePub:
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Transcriptomics and in vivo tests reveal novel mechanisms underlying endocrine disruption in an ecological sentinel, Nucella lapillus.  Pascoal S, Carvalho G, Vasieva O, Hughes R, Cossins A, Fang Y, Ashelford K, Olohan L, Barroso C, Mendo S, Creer S. (2012) Mol Ecol ePub:
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Metagenomics-Based Analysis of Viral Communities in Dairy Lagoon Wastewater.  Alhamlan FS, Ederer MM, Brown CJ, Coats ER, Crawford RL. (2012) J Microbiol Methods pii: S0167-7012: (12)00378-8.
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Mutations of ANK3 identified by exome sequencing are associated with autism susceptibility.  Bi C, Wu J, Jiang T, Liu Q, Cai W, Yu P, Cai T, Zhao M, Jiang YH, Sun ZS.  (2012) Hum Mutat. 33(12): 1635-8
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Extensive somatic L1 retrotransposition in colorectal tumors.  Solyom S, Ewing AD, Rahrmann EP, Doucet T, Nelson HH, Burns MB, Harris RS, Sigmon DF, Casella A, Erlanger B, Wheelan S, Upton KR, Shukla R, Faulkner GJ, Largaespada DA, Kazazian HH Jr.  (2012) Genome Res. 22(12): 2328-38
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Onset of immune senescence defined by unbiased pyrosequencing of human immunoglobulin mRNA repertoires.  Rubelt F, Sievert V, Knaust F, Diener C, Lim TS, Skriner K, Klipp E, Reinhardt R, Lehrach H, Konthur Z. (2012) PLoS One 7(11):: e49774.
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Bacterial Indicator of Agricultural Management for Soil under No-Till Crop Production.  Figuerola EL, Guerrero LD, Rosa SM, Simonetti L, Duval ME, Galantini JA, Bedano JC, Wall LG, Erijman L. (2012) PLoS One 7(11): e51075.
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A microbiota signature associated with experimental food allergy promotes allergic sensitization and anaphylaxis.  Noval Rivas M, Burton OT, Wise P, Zhang YQ, Hobson SA, Garcia Lloret M, Chehoud C, Kuczynski J, Desantis T, Warrington J, Hyde ER, Petrosino JF, Gerber GK, Bry L, Oettgen HC, Mazmanian SK, Chatila TA. (2012) J Allergy Clin Immunol pii: S0091-6749: (12)01694-6.
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Comparative transcriptomic analysis of roots of contrasting gossypium herbaceum genotypes revealing adaptation to drought.  Ranjan A, Pandey N, Lakhwani D, Dubey NK, Pathre UV, Sawant SV. (2012) BMC Genomics 13(1): 680.
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Intestinal microbiota determines development of non-alcoholic fatty liver disease in mice.  Le Roy T, Llopis M, Lepage P, Bruneau A, Rabot S, Bevilacqua C, Martin P, Philippe C, Walker F, Bado A, Perlemuter G, Cassard-Doulcier AM, Gérard P. (2012) Gut ePub:
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A set of plastid microsatellite loci for the genus Dyckia (Bromeliaceae) derived from 454 pyrosequencing.  Krapp F, Wöhrmann T, Pinangé DS, Benko-Iseppon AM, Huettel B, Weising K. (2012) Am J Botany ePub:
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Reactor performance in terms of COD and nitrogen removal and bacterial community structure of a three-stage rotating bioelectrochemical contactor.  Sayess RR, Saikaly PE, El-Fadel M, Li D, Semerjian L. (2012) Water Research pii: S0043-1354: (12)00835-4.
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Exon capture and bulk segregant analysis: rapid discovery of causative mutations using high-throughput sequencing.  del Viso F, Bhattacharya D, Kong Y, Gilchrist MJ, Khokha MK. (2012) BMC Genomics 13: 649.
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Transcriptome database resource and gene expression atlas for the rose.  Annick D, Sebastien C, Olivier R, Benjamin P, Ludovic C, Aymeric R, Jean-Paul O, Soulaiman S, Rossitza A, Sylvie B, Fabrice F, Manuel LB, Jérôme G, Mohammed B. (2012) BMC Genomics 13(1): 638.
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Generation and analysis of expressed sequence tags in the extreme large genomes Lilium and Tulipa.  Shahin A, van Kaauwen M, Esselink D, Bargsten JW, van Tuyl JM, Visser RG, Arens P. (2012) BMC Genomics 13(1): 640.
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A Toolkit for bulk PCR-based marker design from next-generation sequence data: application for development of a framework linkage map in bulb onion (Allium cepa L.).  Baldwin S, Revanna R, Thomson S, Pither-Joyce M, Wright K, Crowhurst R, Fiers M, Chen L, Macknight R, McCallum JA. (2012) BMC Genomics 13(1): 637.
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Diversity patterns of uncultured Haptophytes unravelled by pyrosequencing in Naples Bay.  Bittner L, Gobet A, Audic S, Romac S, Egge ES, Santini S, Ogata H, Probert I, Edvardsen B, de Vargas C. (2012) Mol Ecol ePub:
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Copy Number Variation detection from 1000 Genomes project exon capture sequencing data.  Wu J, Grzeda KR, Stewart C, Grubert F, Urban AE, Snyder MP, Marth GT. (2012) BMC Bioinformatics 13(1): 305.
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Diversity and population structure of Marine Group A bacteria in the Northeast subarctic Pacific Ocean.  Allers E, Wright JJ, Konwar KM, Howes CG, Beneze E, Hallam SJ, Sullivan MB. (2012) ISME Journal ePub:
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Transcriptome Sequencing and Annotation for the Jamaican Fruit Bat (Artibeus jamaicensis).  Shaw TI, Srivastava A, Chou WC, Liu L, Hawkinson A, Glenn TC, Adams R, Schountz T. (2012) PLoS One 7(11): e48472.
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Whole-exome sequencing identifies mutations in the nucleoside transporter gene SLC29A3 in dysosteosclerosis, a form of osteopetrosis.  Campeau PM, Lu JT, Sule G, Jiang MM, Bae Y, Madan S, Högler W, Shaw NJ, Mumm S, Gibbs RA, Whyte MP, Lee BH.  (2012) Hum Mol Genet 21(22): 4904-9.
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Whole-exome sequencing identifies mutations in the nucleoside transporter gene SLC29A3 in dysosteosclerosis, a form of osteopetrosis.  Campeau PM, Lu JT, Sule G, Jiang MM, Bae Y, Madan S, Högler W, Shaw NJ, Mumm S, Gibbs RA, Whyte MP, Lee BH.  (2012) Hum Mol Genet. 21(22):: 4904-9
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Transcriptome de novo assembly from next-generation sequencing and comparative analyses in the hexaploid salt marsh species Spartina maritima and Spartina alterniflora (Poaceae).  Ferreira de Carvalho J, Poulain J, Da Silva C, Wincker P, Michon-Coudouel S, Dheilly A, Naquin D, Boutte J, Salmon A, Ainouche M. (2012) Heredity (Edinb) ePub:
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High-throughput novel microsatellite marker of faba bean via next generation sequencing.  Yang T, Bao SY, Ford R, Jia TJ, Guan JP, He YH, Sun XL, Jiang JY, Hao JJ, Zhang XY, Zong XX. (2012) BMC Genomics 13(1): 602.
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Searching for resistance genes to Bursaphelenchus xylophilus using high throughput screening.  ntos CS, Pinheiro M, Silva AI, Egas C, Vasconcelos MW.  (2012) BMC Genomics 13(1): 599.
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Next generation sequencing to define prokaryotic and fungal diversity in the bovine rumen.  Fouts DE, Szpakowski S, Purushe J, Torralba M, Waterman RC, Macneil MD, Alexander LJ, Nelson KE. (2012) PLoS One 156(2): e4828.
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A Jungle in There: Bacteria in Belly Buttons are Highly  Hulcr J, Latimer AM, Henley JB, Rountree NR, Fierer N, Lucky A, Lowman MD, Dunn RR. (2012) PLoS One 7(11): e47712.
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Nuclear Microsatellite Primers for the Endangered Relict Fir, Abies pinsapo (Pinaceae) and Cross-Amplification in Related Mediterranean Species.  Sánchez-Robles JM, Balao F, García-Castańo JL, Terrab A, Navarro-Sampedro L, Talavera S. (2012) Int J Mol Sci 13(11): 14243-50.
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Molecular evidence for the bi-clonal origin of neuroendocrine tumor derived metastases.  Rinner B, Gallč B, Trajanoski S, Fischer C, Hatz M, Maierhofer T, Michelitsch G, Moinfar F, Stelzer I, Pfragner R, Guelly C.  (2012) BMC Genomics 13: 594.
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Library preparation and multiplex capture for massive parallel sequencing applications made efficient and easy.  Neiman M, Sundling S, Grönberg H, Hall P, Czene K, Lindberg J, Klevebring D.  (2012) PLoS One 7(11):
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Diel gene expression profiles of a phosphorus limited mountain lake using metatranscriptomics.  Vila-Costa M, Sharma S, Moran MA, Casamayor EO. (2012) Environ Microbiol ePub:
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Imputation of exome sequence variants into population- based samples and blood-cell-trait-associated loci in African Americans: NHLBI GO Exome Sequencing Project.  Auer PL, Johnsen JM, Johnson AD, Logsdon BA, Lange LA, Nalls MA, Zhang G, Franceschini N, Fox K, Lange EM, Rich SS, O'Donnell CJ, Jackson RD, Wallace RB, Chen Z, Graubert TA, Wilson JG, Tang H, Lettre G, Reiner AP, Ganesh SK, Li Y.  (2012) Am J Hum Genet 91(5): 794-808.
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An integrated map of genetic variation from 1,092 human genomes.  1000 Genomes Project Consortium, Abecasis GR, Auton A, Brooks LD, DePristo MA, Durbin RM, Handsaker RE, Kang HM, Marth GT, McVean GA.  (2012) Nature 491(7422): 56-65.
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A novel homozygous mutation in SUCLA2 gene identified by exome sequencing.  Lamperti C, Fang M, Invernizzi F, Liu X, Wang H, Zhang Q, Carrara F, Moroni I, Zeviani M, Zhang J, Ghezzi D.  (2012) Mol Genet Metab 107(3): 403-8.
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Changes in genome content generated via segregation of non-allelic homologs.  Liu S, Ying K, Yeh CT, Yang J, Swanson-Wagner R, Wu W, Richmond T, Gerhardt DJ, Lai J, Springer N, Nettleton D, Jeddeloh JA, Schnable PS.  (2012) Plant Journal 72(3): 390-9.
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Commonly altered genomic regions in acute myeloid leukemia are enriched for somatic mutations involved in chromatin remodeling and splicing.  Dolnik A, Engelmann JC, Scharfenberger-Schmeer M, Mauch J, Kelkenberg-Schade S, Haldemann B, Fries T, Krönke J, Kühn MW, Paschka P, Kayser S, Wolf S, Gaidzik VI, Schlenk RF, Rücker FG, Döhner H, Lottaz C, Döhner K, Bullinger L. (2012) Blood 120(18): e83-92.
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Validation of genome-wide intervertebral disk calcification associations in dachshund and further investigation of the chromosome 12 susceptibility locus.  Mogensen MS, Scheibye-Alsing K, Karlskov-Mortensen P, Proschowsky HF, Jensen VF, Bak M, Tommerup N, Kadarmideen HN, Fredholm M.  (2012) Front Genet 3: 225.
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Whole mitochondrial genome analysis of a family with NARP/MILS caused by m.8993T>C mutation in the MT-ATP6 gene.  Kara B, Arýkan M, Maraţ H, Abacý N, Cakýris A, Ustek D. (2012) Mol Genet Metab 107(3): 389-93.
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Metagenomic analysis of the microbiota from the crop of an invasive snail reveals a rich reservoir of novel genes.  Cardoso AM, Cavalcante JJ, Cantăo ME, Thompson CE, Flatschart RB, Glogauer A, Scapin SM, Sade YB, Beltrăo PJ, Gerber AL, Martins OB, Garcia ES, de Souza W, Vasconcelos AT.  (2012) PLoS One 7(11): e48505.
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Bacterial Flora of Dental Periradicular Lesions Analyzed by the 454-Pyrosequencing Technology.  Saber MH, Schwarzberg K, Alonaizan FA, Kelley ST, Sedghizadeh PP, Furlan M, Levy TA, Simon JH, Slots J.  (2012) J Endod 38(11): 1484-8.
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Advances in genetics and molecular breeding of three legume crops of semi-arid tropics using next-generation sequencing and high-throughput genotyping technologies.  Varshney RK, Kudapa H, Roorkiwal M, Thudi M, Pandey MK, Saxena RK, Chamarthi SK, S MM, Mallikarjuna N, Upadhyaya H, Gaur PM, Krishnamurthy L, Saxena KB, Nigam SN, Pande S.  (2012) J Biosci 37(5): 811-20.
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Exome sequencing of hepatitis B virus-associated hepatocellular carcinoma.  Huang J, Deng Q, Wang Q, Li KY, Dai JH, Li N, Zhu ZD, Zhou B, Liu XY, Liu RF, Fei QL, Chen H, Cai B, Zhou B, Xiao HS, Qin LX, Han ZG.  (2012) Nat Genet. 44(10: 1117-21
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Complete mitochondrial genome of Concholepas concholepas inferred by 454 pyrosequencing and mtDNA expression in two mollusc populations.  Núńez-Acuńa G, Aguilar-Espinoza A, Gallardo-Escárate C. (2012) Comp Biochem Physiol Part D Genomics Proteomics 13(1): 17-23.
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Whole genome sequencing of phage resistant Bacillus anthracis mutants reveals an essential role for cell surface anchoring protein CsaB in phage AP50c adsorption.  Bishop-Lilly KA, Plaut RD, Chen PE, Akmal A, Willner KM, Butani A, Dorsey S, Mokashi V, Mateczun AJ, Chapman C, George M, Luu T, Read TD, Calendar R, Stibitz S, Sozhamannan S.  (2012) Virology Journal 9(1): 246.
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Transcriptome Analysis Reveals Putative Genes Involved in Iridoid Biosynthesis in Rehmannia glutinosa.  Sun P, Song S, Zhou L, Zhang B, Qi J, Li X. (2012) Int J Mol Sci 13(10): 13748-63.
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Characterization of H3K9me3- and H4K20me3-associated circulating nucleosomal DNA by high-throughput sequencing in colorectal cancer.  Gezer U, Ustek D, Yörüker EE, Cakiris A, Abaci N, Leszinski G, Dalay N, Holdenrieder S. (2012) Tumour Biology ePub:
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Effects of dietary fiber on the feline gastrointestinal metagenome.  Barry KA, Middelbos IS, Vester Boler BM, Dowd SE, Suchodolski JS, Henrissat B, Coutinho PM, White BA, Fahey GC, Swanson KS.  (2012) J Proteome Res ePub:
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Fine mapping of complex traits in non-model species: using next generation sequencing and advanced intercross lines in Japanese quail.  Fresard L, Leroux S, Dehais P, Servin B, Gilbert H, Bouchez O, Klopp C, Cabau C, Vignoles F, Feve K, Ricros A, Gourichon D, Diot C, Richard S, Leterrier C, Beaumont C, Vignal A, Minvielle F, Pitel F.  (2012) BMC Genomics 13(1): 551.
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Sequencing of the core MHC region of black grouse (Tetrao tetrix) and comparative genomics of the galliform MHC.  Wang B, Ekblom R, Strand T, Portela-Bens S, Hoglund J.  (2012) BMC Genomics 13(1): 553.
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Microbial community response during the iron fertilization experiment LOHAFEX.  Thiele S, Fuchs BM, Ramaiah N, Amann R.  (2012) Appl Environ Microbiol ePub:
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Nurture trumps nature in a longitudinal survey of salivary bacterial communities in twins from early adolescence to early adulthood.  Stahringer SS, Clemente JC, Corley RP, Hewitt J, Knights D, Walters WA, Knight R, Krauter KS.  (2012) Genome Research ePub:
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Pathogenic simian immunodeficiency virus infection is associated with expansion of the enteric virome.  Handley SA, Thackray LB, Zhao G, Presti R, Miller AD, Droit L, Abbink P, Maxfield LF, Kambal A, Duan E, Stanley K, Kramer J, Macri SC, Permar SR, Schmitz JE, Mansfield K, Brenchley JM, Veazey RS, Stappenbeck TS, Wang D, Barouch DH, Virgin HW.  (2012) Cell 151(2): 253-66.
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Small Changes in pH Have Direct Effects on Marine Bacterial Community Composition: A Microcosm Approach.  Krause E, Wichels A, Giménez L, Lunau M, Schilhabel MB, Gerdts G.  (2012) PLoS One 7(10): e47035.
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The lung microbiome in moderate and severe chronic obstructive pulmonary disease.  Pragman AA, Kim HB, Reilly CS, Wendt C, Isaacson RE.  (2012) PLoS One 7(10): 7e47305.
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Transcriptome analysis of the salivary glands of potato leafhopper, Empoasca fabae.  Delay B, Mamidala P, Wijeratne A, Wijeratne S, Mittapalli O, Wang J, Lamp W.  (2012) J Insect Physiol pii: S0022-1910: (12)00245-4.
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Identification of an avian group A rotavirus containing a novel VP4 gene of close relationship to those of mammalian rotaviruses.  Trojnar E, Sachsenroder J, Twardziok S, Reetz J, Otto PH, Johne R.  (2012) J Gen Virology ePub:
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Molecular Analysis of Bacterial Communities in Biofilms of a Drinking Water Clearwell.  Zhang M, Liu W, Nie X, Li C, Gu J, Zhang C.  (2012) Microbes Environ ePub:
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High through put 16S rRNA gene-based pyrosequencing analysis of the fecal microbiota of high FCR and low FCR broiler growers.  Singh KM, Shah T, Deshpande S, Jakhesara SJ, Koringa PG, Rank DN, Joshi CG.  (2012) Mol Biol Rep ePub:
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Social and extra-pair mating in relation to major histocompatibility complex variation in common yellowthroats.  Bollmer JL, Dunn PO, Freeman-Gallant CR, Whittingham LA.  (2012) Proc Biol Sci ePub:
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The Caulobacter crescentus phage phiCbK: genomics of a canonical phage.  Gill JJ, Berry JD, Russell WK, Lessor L, Escobar Garcia DA, Hernandez D, Kane A, Keene J, Maddox M, Martin R, Mohan S, Thorn AM, Russell DH, Young R.  (2012) BMC Genomics 13(1): 542.
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Complete genome sequence of Treponema pallidum strain DAL-1.  Zobaníková M, Mikolka P, Cejková D, Pospíšilová P, Chen L, Strouhal M, Qin X, Weinstock GM, Smajs D.  (2012) Stand Genomic Sci 7(1): 12-21.
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Microbiota of De-Novo Pediatric IBD: Increased Faecalibacterium Prausnitzii and Reduced Bacterial Diversity in Crohn's But Not in Ulcerative Colitis.  Hansen R, Russell RK, Reiff C, Louis P, McIntosh F, Berry SH, Mukhopadhya I, Bisset WM, Barclay AR, Bishop J, Flynn DM, McGrogan P, Loganathan S, Mahdi G, Flint HJ, El-Omar EM, Hold GL.  (2012) Am J Gastroenterol ePub:
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Whole-exome sequencing of a pedigree segregating asthma.  DeWan AT, Egan KB, Hellenbrand K, Sorrentino K, Pizzoferrato N, Walsh KM, Bracken MB.  (2012) BMC Med Genet 13: 95.
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Pole-to-pole biogeography of surface and deep marine bacterial communities.  Ghiglione JF, Galand PE, Pommier T, Pedrós-Alió C, Maas EW, Bakker K, Bertilson S, Kirchman DL, Lovejoy C, Yager PL, Murray AE (2012) PNAS ePub:
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Pyrosequencing of epizootic rabbit enteropathy inocula and rabbit caecal samples.  ybens N, Houeix J, Licois D, Mainil J, Marlier D.  (2012) Vet Journal ePub:
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Upper airways microbiota in antibiotic-naďve wheezing and healthy infants from the tropics of rural ecuador.  Cardenas PA, Cooper PJ, Cox MJ, Chico M, Arias C, Moffatt MF, Cookson WO.  (2012) PLoS One 7(10): e46803.
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Characterization of the Fecal Microbiota Using High-Throughput Sequencing Reveals a Stable Microbial Community during Storage.  Carroll IM, Ringel-Kulka T, Siddle JP, Klaenhammer TR, Ringel Y.  (2012) PLoS One 7(10): e46953.
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Comprehensive molecular portraits of human breast tumours.  Cancer Genome Atlas Network.  (2012) Nature 490(7418): 61-70.
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Calpain-5 mutations cause autoimmune uveitis, retinal neovascularization, and photoreceptor degeneration.  Mahajan VB, Skeie JM, Bassuk AG, Fingert JH, Braun TA, Daggett HT, Folk JC, Sheffield VC, Stone EM.  (2012) PLoS Genet. 8(10):
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De novo gene mutations highlight patterns of genetic and neural complexity in schizophrenia.  Xu B, Ionita-Laza I, Roos JL, Boone B, Woodrick S, Sun Y, Levy S, Gogos JA, Karayiorgou M.  (2012) Nat Genet. 44(12): 1365-9
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Use of cassette-electrode microbial fuel cell for wastewater treatment.  Miyahara M, Hashimoto K, Watanabe K.  (2012) J Biosci Bioeng pii: S1389-1723: (12)00371-4.
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Gut microbiota composition is correlated to grid floor induced stress and behavior in the BALB/c mouse.  Bangsgaard Bendtsen KM, Krych L, Sřrensen DB, Pang W, Nielsen DS, Josefsen K, Hansen LH, Sřrensen SJ, Hansen AK.  (2012) PLoS One 7(10): e46231.
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Use of cassette-electrode microbial fuel cell for wastewater treatment.  Miyahara M, Hashimoto K, Watanabe K. (2012) J Biosci Bioeng pii: S1389-1723(12): 00371-4.
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ENU mutagenesis identifies the first mouse mutants reproducing human â-thalassemia at the genomic level.  Brown FC, Scott N, Rank G, Collinge JE, Vadolas J, Vickaryous N, Whitelaw N, Whitelaw E, Kile BT, Jane SM, Curtis DJ.  (2012) Blood Cells Mol Dis. 50(2): 86-92
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Correlating microbial community profiles with geochemical data in highly stratified sediments from the Arctic Mid-Ocean Ridge.  Jorgensen SL, Hannisdal B, Lanzén A, Baumberger T, Flesland K, Fonseca R, Ovreĺs L, Steen IH, Thorseth IH, Pedersen RB, Schleper C.  (2012) PNAS ePub:
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Draft Genome Sequence of Halomonas smyrnensis AAD6T.  Sogutcu E, Emrence Z, Arikan M, Cakiris A, Abaci N, Oner ET, Ustek D, Arga KY.  (2012) J Bacteriology 194(20): 5690-1.
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Digital marine bioprospecting: mining new neurotoxin drug candidates from the transcriptomes of cold-water sea anemones.  Urbarova I, Karlsen BO, Okkenhaug S, Seternes OM, Johansen SD, Emblem A. (2012) Mar Drugs 10(10): 2265-79.
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Identification of a novel mutation in the CDHR1 gene in a family with recessive retinal degeneration.  Duncan JL, Roorda A, Navani M, Vishweswaraiah S, Syed R, Soudry S, Ratnam K, Gudiseva HV, Lee P, Gaasterland T, Ayyagari R.  (2012) Arch Opthamolol 130(10): 1301-8.
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Using Exome Sequencing to Reveal Mutations in TREM2 Presenting as a Frontotemporal Dementia-like Syndrome Without Bone Involvement.  Guerreiro RJ, Lohmann E, Brás JM, Gibbs JR, Rohrer JD, Gurunlian N, Dursun B, Bilgic B, Hanagasi H, Gurvit H, Emre M, Singleton A, Hardy J.  (2012) Arch Neurol : 1-7
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Carbon Nanotubes as Plant Growth Regulators: Effects on Tomato Growth, Reproductive System, and Soil Microbial Community.  Khodakovskaya MV, Kim BS, Kim JN, Alimohammadi M, Dervishi E, Mustafa T, Cernigla CE.  (2012) Small ePub:
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Metaproteome analysis and molecular genetics of rat intestinal microbiota reveals section and localisation resolved species distribution and enzymatic functionalities.  Haange SB, Oberbach A, Schlichting N, Hugenholtz F, Smidt H, von Bergen M, Till H, Seifert J.  (2012) J Proteome Res ePub:
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A Genotypic Test for HIV-1 Tropism Combining Sanger Sequencing with Ultradeep Sequencing Predicts Virologic Response in Treatment-Experienced Patients.  Kagan RM, Johnson EP, Siaw M, Biswas P, Chapman DS, Su Z, Platt JL, Pesano RL. (2012) PLoS One 7(9): e46334.
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Transcriptomic analysis of four developmental stages of Strongyloides venezuelensis.  Nagayasu E, Ogura Y, Itoh T, Yoshida A, Chakraborty G, Hayashi T, Maruyama H.  (2012) Parasitol Int pii: S1383-5769: (12)00129-8.
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Exome sequencing identifies rare deleterious mutations in DNA repair genes FANCC and BLM as potential breast cancer susceptibility alleles.  Thompson ER, Doyle MA, Ryland GL, Rowley SM, Choong DY, Tothill RW, Thorne H; kConFab, Barnes DR, Li J, Ellul J, Philip GK, Antill YC, James PA, Trainer AH, Mitchell G, Campbell IG.  (2012) PLoS Genet. 8(9):
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Acidobacterial community responses to agricultural management of soybean in Amazon forest soils.  Navarrete AA, Kuramae EE, de Hollander M, Pijl AS, van Veen JA, Tsai SM.  (2012) FEMS Microbiol Ecol ePub:
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Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment.  Morgan XC, Tickle TL, Sokol H, Gevers D, Devaney KL, Ward DV, Reyes JA, Shah SA, Leleiko N, Snapper SB, Bousvaros A, Korzenik J, Sands BE, Xavier RJ, Huttenhower C.  (2012) Genome Biology 13(9): R79.
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Culture-dependent and --independent investigations of microbial diversity on urinary catheters.  Xu Y, Moser C, Al-Soud WA, Sřrensen S, Hřiby N, Nielsen PH, Thomsen TR.  (2012) J Clin Microbiol ePub:
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Transcriptomic and Proteomic Analyses of a Wolbachia-Free Filarial Parasite Provide Evidence of Trans-Kingdom Horizontal Gene Transfer.  McNulty SN, Abubucker S, Simon GM, Mitreva M, McNulty NP, Fischer K, Curtis KC, Brattig NW, Weil GJ, Fischer PU.  (2012) PLoS One 7(9): e45777
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The Adult Cystic Fibrosis Airway Microbiota Is Stable over Time and Infection Type, and Highly Resilient to Antibiotic Treatment of Exacerbations.  Fodor AA, Klem ER, Gilpin DF, Elborn JS, Boucher RC, Tunney MM, Wolfgang MC.  (2012) PLoS One 7(9): e45001.
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Mutations in the INF2 gene account for a significant proportion of familial but not sporadic focal and segmental glomerulosclerosis.  Barua M, Brown EJ, Charoonratana VT, Genovese G, Sun H, Pollak MR.  (2012) Kidney Int. 83(2): Epub
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Complete nucleotide sequence of the large conjugative pTC2 multireplicon plasmid encoding the VIM-1 metallo-β-lactamase.  ieux L, Decré D, Frangeul L, Arlet G, Jarlier V, Sougakoff W.  (2012) J Antimicrob Chemother ePub:
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ral metagenomics demonstrates that domestic pigs are a potential reservoir for Ndumu virus.  Masembe C, Michuki G, Onyango M, Rumberia C, Norling M, Bishop RP, Djikeng A, Kemp SJ, Orth A, Skilton RA, Stĺhl K, Fischer A.  (2012) Virology J 9(1): 218.
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Pyrosequencing-Based Analysis of the Microbiome Associated with the Horn Fly, Haematobia irritans.  Palavesam A, Guerrero FD, Heekin AM, Wang J, Dowd SE, Sun Y, Foil LD, Pérez de León AA.  (2012) PLoS One 7(9): e44390.
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Murine Gut Microbiota and Transcriptome Are Diet Dependent.  Carlisle EM, Poroyko V, Caplan MS, Alverdy J, Morowitz MJ, Liu D.  (2012) Ann Surg ePub:
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Full-length genome sequence of Ntaya virus.  Dilcher M, Sall AA, Hufert FT, Weidmann M.  (2012) Virus Genes ePub:
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Fungal diversity is not determined by mineral and chemical differences in serpentine substrates.  Daghino S, Murat C, Sizzano E, Girlanda M, Perotto S.  (2012) PLoS One 7(9): e44233.
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Transcriptome-scale homoeolog-specific transcript assemblies of bread wheat.  Schreiber AW, Hayden MJ, Forrest KL, Kong SL, Langridge P, Baumann U.  (2012) BMC Genomics 13(1): 492.
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Next generation sequencing and comparative analyses of Xenopus mitogenomes.  Lloyd RE, Foster PG, Guille M, Littlewood DT.  (2012) BMC Genomics 13(1): 496.
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A novel missense SNRNP200 mutation associated with autosomal dominant retinitis pigmentosa in a Chinese family.  Liu T, Jin X, Zhang X, Yuan H, Cheng J, Lee J, Zhang B, Zhang M, Wu J, Wang L, Tian G, Wang W.  (2012) PLoS One. 7(9):
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Sequencing and characterization of striped venus transcriptome expand resources for clam fishery genetics.  Coppe A, Bortoluzzi S, Murari G, Marino IA, Zane L, Papetti C.  (2012) PLoS One 7(9): e44185.
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A Global Identification and Analysis of Small Nucleolar RNAs and Possible Intermediate-Sized Non-Coding RNAs in Oryza sativa.  Liu TT, Zhu D, Chen W, Deng W, He H, He G, Bai B, Qi Y, Chen R, Deng XW.  (2012) Mol Plant ePub:
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Antibody isolation from immunized animals: comparison of phage display and antibody discovery via V gene repertoire mining.  Saggy I, Wine Y, Shefet-Carasso L, Nahary L, Georgiou G, Benhar I.  (2012) Protein Eng Des Sel ePub:
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Prevention of Virus-Induced Type 1 Diabetes with Antibiotic Therapy.  Hara N, Alkanani AK, Ir D, Robertson CE, Wagner BD, Frank DN, Zipris D.  (2012) J Immunology ePub:
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Organic Layer Serves as a Hotspot of Microbial Activity and Abundance in Arctic Tundra Soils.  Lee SH, Jang I, Chae N, Choi T, Kang H.  (2012) Microbial Ecology ePub:
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Chronic N-amended soils exhibit an altered bacterial community structure in Harvard Forest, MA, USA.  Turlapati SA, Minocha R, Bhiravarasa PS, Tisa LS, Thomas WK, Minocha SC.  (2012) FEMS Microbiol Ecol ePub:
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Microbial ecology of the rumen evaluated by 454 GS FLX pyrosequencing is affected by starch and oil supplementation of diets. R2.  Zened A, Combes S, Cauquil L, Mariette J, Klopp C, Bouchez O, Troegeler-Meynadier A, Enjalbert F.  (2012) FEMS Microbiol Ecol ePub:
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Alterations of microbiota in urine from women with interstitial cystitis.  Siddiqui H, Lagesen K, Nederbragt AJ, Jeansson SL, Jakobsen KS.  (2012) BMC Microbiol 12(1): 205.
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Estimating reassortment rates in co-circulating Eurasian swine influenza viruses.  Lycett SJ, Baillie G, Coulter E, Bhatt S, Kellam P, McCauley JW, Wood JL, Brown IH, Pybus OG, Leigh Brown AJ, Cosi Consortium CS.  (2012) J Gen Virology ePub:
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Pyrosequencing as a tool for detection of Phytophthora species: error rate and risk of false MOTUs.  Vettraino AM, Bonants P, Tomassini A, Bruni N, Vannini A.  (2012) Lett Appl Microbiol ePub:
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Nematode spatial and ecological patterns from tropical and temperate rainforests.  Porazinska DL, Giblin-Davis RM, Powers TO, Thomas WK.  (2012) PLoS One 7(9): e44641.
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Metagenomic and geochemical characterization of pockmarked sediments overlaying the Troll petroleum reservoir in the North Sea.  Hĺvelsrud OE, Haverkamp TH, Kristensen T, Jakobsen KS, Rike AG. (2012) BMC Microbiol 12(1): 203.
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Viral metagenomic analysis of bushpigs (Potamochoerus larvatus) in Uganda identifies novel variants of Porcine parvovirus 4 and Torque teno sus virus 1 and 2.  Blomström AL, Stĺhl K, Masembe C, Okoth E, Okurut AR, Atmnedi P, Kemp S, Bishop R, Belak S, Berg M.  (2012) Virology Journal 9(1): 192.
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Somatic Populations of PGT135-137 HIV-1-Neutralizing Antibodies Identified by 454 Pyrosequencing and Bioinformatics.  Zhu J, O'Dell S, Ofek G, Pancera M, Wu X, Zhang B, Zhang Z; NISC Comparative Sequencing Program, Mullikin JC, Simek M, Burton DR, Koff WC, Shapiro L, Mascola JR, Kwong PD.  (2012) Front Microbiol 3: 315.
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Thermophilic Enrichment of Microbial Communities in the Presence of the Ionic Liquid 1-ethyl-3-methylimidazolium acetate.  Reddy AP, Simmons CW, Claypool J, Jabusch L, Burd H, Hadi MZ, Simmons BA, Singer SW, Vandergheynst JS.  (2012) J Appl Microbiol ePub:
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Assessing bacterial populations in the lung by replicate analysis of samples from the upper and lower respiratory tracts.  Charlson ES, Bittinger K, Chen J, Diamond JM, Li H, Collman RG, Bushman FD.  (2012) PLoS One 7(9): e42786.
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Nontypeable Haemophilus influenzae Genetic Islands Associated with Chronic Pulmonary Infection.  Zhang L, Xie J, Patel M, Bakhtyar A, Ehrlich GD, Ahmed A, Earl J, Marrs CF, Clemans D, Murphy TF, Gilsdorf JR.  (2012) PLoS One 7(9): e44730.
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Microbial shifts in the swine distal gut in response to the treatment with antimicrobial growth promoter, tylosin.  Kim HB, Borewicz K, White BA, Singer RS, Sreevatsan S, Tu ZJ, Isaacson RE.  (2012) PNAS ePub:
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Major histocompatibility complex class II compatibility, but not class I, predicts mate choice in a bird with highly developed olfaction.  Strandh M, Westerdahl H, Pontarp M, Canbäck B, Dubois MP, Miquel C, Taberlet P, Bonadonna F.  (2012) Proc Biol Sci ePub:
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Complete genome sequence of Acinetobacter baumannii MDR-TJ and insights into its mechanism of antibiotic resistance.  Huang H, Yang ZL, Wu XM, Wang Y, Liu YJ, Luo H, Lv X, Gan YR, Song SD, Gao F.  (2012) J Antimicrob Chemother ePub:
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Large-scale MHC class II genotyping of a wild lemur population by next generation sequencing.  Huchard E, Albrecht C, Schliehe-Diecks S, Baniel A, Roos C, Peter PM, Brameier M.  (2012) Immunogenetics ePub:
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High-throughput sequencing reveals the incomplete, short-term, recovery of the infant gut microbiota following parenteral antibiotic treatment with ampicillin and gentamycin.  Fouhy F, Guinane CM, Hussey S, Wall R, Ryan CA, Dempsey EM, Murphy B, Ross RP, Fitzgerald GF, Stanton C, Cotter PD.  (2012) Antimicrob Agents Chemother ePub:
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Development of a standardized approach for environmental microbiota investigations related to asthma development in children.  mura KE, Rauch M, Matsui E, Iwai S, Calatroni A, Lynn H, Mitchell H, Johnson CC, Gern JE, Togias A, Boushey HA, Kennedy S, Lynch SV.  (2012) J Microbiol Methods ePub:
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Microbial culturomics: paradigm shift in the human gut microbiome study.  Lagier JC, Armougom F, Million M, Hugon P, Pagnier I, Robert C, Bittar F, Fournous G, Gimenez G, Maraninchi M, Trape JF, Koonin EV, La Scola B, Raoult D.  (2012) Clin Microbiol Infect ePub:
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Ubiquitin-conjugating enzyme E2-like gene associated to pathogen response in Concholepas concholepas: SNP identification and transcription expression.  Núńez-Acuńa G, Aguilar-Espinoza A, Chávez-Mardones J, Gallardo-Escárate C.  (2012) Fish Shellfish Immunol ePub:
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Phylogenetically diverse TT virus viremia among pregnant women.  Bzhalava D, Ekström J, Lysholm F, Hultin E, Faust H, Persson B, Lehtinen M, de Villiers EM, Dillner J.  (2012) Virology 432(2): 427-34.
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Thousands of microsatellite loci from the venomous coralsnake Micrurus fulvius and variability of select loci across populations and related species.  Castoe TA, Streicher JW, Meik JM, Ingrasci MJ, Poole AW, de Koning AP, Campbell JA, Parkinson CL, Smith EN, Pollock DD.  (2012) Mol Ecol Resour ePub:
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Population Genomics of Chlamydia trachomatis: Insights on Drift, Selection, Recombination, and Population Structure.  Joseph SJ, Didelot X, Rothschild J, de Vries HJ, Morré SA, Read TD, Dean D.  (2012) Mol Biol Evol ePub:
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Draft Genome Sequence of Corynebacterium diphtheriae Biovar Intermedius NCTC 5011.  Sangal V, Tucker NP, Burkovski A, Hoskisson PA.  (2012) J Bacteriology 194(17): 4738.
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The epiphytic microbiota of the globally widespread macroalga Cladophora glomerata (Chlorophyta, Cladophorales).  Zulkifly S, Hanshew A, Young EB, Lee P, Graham ME, Graham ME, Piotrowski M, Graham LE.  (2012) Am J Bot 99(9): 1541-52.
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Large-scale candidate gene scan reveals the role of chemoreceptor genes in host plant specialization and speciation in the pea aphid.  Smadja CM, Canbäck B, Vitalis R, Gautier M, Ferrari J, Zhou JJ, Butlin RK.  (2012) Evolution 66(9): 2723-38.
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Identification of somatic mutations in parathyroid tumors using whole-exome sequencing.  Cromer MK, Starker LF, Choi M, Udelsman R, Nelson-Williams C, Lifton RP, Carling T.  (2012) J Clin Endocrinol Metab 97(9): E1774-81.
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A putative role for amino acid permeases in sink-source communication of barley tissues uncovered by RNA-seq.  Kohl S, Hollmann J, Blattner FR, Radchuk V, Andersch F, Steuernagel B, Schmutzer T, Scholz U, Krupinska K, Weber H, Weschke W.  (2012) BMC Plant Biol 12(1): 154.
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The composition of phyllosphere fungal assemblages of European beech (Fagus sylvatica) varies significantly along an elevation gradient.  Cordier T, Robin C, Capdevielle X, Fabreguettes O, Desprez-Loustau ML, Vacher C.  (2012) New Phytologist ePub:
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RNA-Seq of Early-Infected Poplar Leaves by the Rust Pathogen Melampsora larici-populina Uncovers PtSultr3;5, a Fungal-Induced Host Sulfate Transporter.  Petre B, Morin E, Tisserant E, Hacquard S, Da Silva C, Poulain J, Delaruelle C, Martin F, Rouhier N, Kohler A, Duplessis S.  (2012) PLoS One 7(8): e44408.
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New insights in gut microbiota establishment in healthy breast fed neonates.  Jost T, Lacroix C, Braegger CP, Chassard C.  (2012) PLoS One 7(8): e44595.
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Recurrent R-spondin fusions in colon cancer.  Seshagiri S et al. (2012) Nature. 488(7413): 660-4
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Exploring Bacterial Diversity in Hospital Environments by GS-FLX Titanium Pyrosequencing.  Poza M, Gayoso C, Gómez MJ, Rumbo-Feal S, Tomás M, Aranda J, Fernández A, Bou G.  (2012) PLoS One 7(8): e44105.
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Microsatellite markers for population studies of Phytophthora megakarya (Pythiaceae), a cacao pathogen in Africa.  gue CV, Herail C, Adreit H, Mbenoun M, Techou Z, Ten Hoopen M, Tharreau D, Ducamp M.  (2012) Am J Botany ePub:
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Ancient T-independence of mucosal IgX/A: gut microbiota unaffected by larval thymectomy in Xenopus laevis.  Mashoof S, Goodroe A, Du CC, Eubanks JO, Jacobs N, Steiner JM, Tizard I, Suchodolski JS, Criscitiello MF.  (2012) Mucosal Immunol ePub:
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PCR amplification and high throughput sequencing of immunoglobulin heavy chain genes from formalin-fixed paraffin-embedded human biopsies.  Tabibian-Keissar H, Schibby G, Michaeli M, Rakovsky-Shapira A, Azogui-Rosenthal N, Dunn-Walters DK, Rosenblatt K, Mehr R, Barshack I.  (2012) Exp Mol Pathol ePub:
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Lymphotoxin regulates commensal responses to enable diet-induced obesity.  Upadhyay V, Poroyko V, Kim TJ, Devkota S, Fu S, Liu D, Tumanov AV, Koroleva EP, Deng L, Nagler C, Chang EB, Tang H, Fu YX.  (2012) Nature Immunology ePub:
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Microbiome diversity in the bronchial tract of patients with chronic obstructive pulmonary disease.  Cabrera-Rubio R, Garcia-Núńez M, Setó L, Antó JM, Moya A, Monsó E, Mira A.  (2012) J Clin Microbiol ePub:
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Yellow lupin (Lupinus luteus L.) transcriptome sequencing: molecular marker development and comparative studies.  Parra-Gonzalez LB, Aravena-Abarzua GA, Navarro-Navarro CS, Udall JA, Maugham PJ, Peterson LM, Salgo-Garrido HE, Maureira Butler IJ.  (2012) BMC Genomics 13(1): 425.
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New microsatellite markers for the abalone Haliotis midae developed by 454 pyrosequencing and in silico analyses.  Slabbert R, Hepple JA, Rhode C, Bester-Van der Merwe AE, Roodt-Wilding R.  (2012) Genet Mol Res 11(3): 2769-79.
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Performance of VIDISCA-454 in Feces-Suspensions and Serum.  de Vries M, Oude Munnink BB, Deijs M, Canuti M, Koekkoek SM, Molenkamp R, Bakker M, Jurriaans S, van Schaik BD, Luyf AC, Olabarriaga SD, van Kampen AH, van der Hoek L.  (2012) Viruses 4(8): 1328-34.
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Bacteria and diatom co-occurrence patterns in microbial mats from polar desert streams.  Stanish LF, O'Neill SP, Gonzalez A, Legg TM, Knelman J, McKnight DM, Spaulding S, Nemergut DR.  (2012) Environ Microbiol ePub:
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Antibiotics in early life alter the murine colonic microbiome and adiposity.  Cho I, Yamanishi S, Cox L, Methé BA, Zavadil J, Li K, Gao Z, Mahana D, Raju K, Teitler I, Li H, Alekseyenko AV, Blaser MJ.  (2012) Nature ePub:
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Determining the Diet of Larvae of Western Rock Lobster (Panulirus cygnus) Using High-Throughput DNA Sequencing Techniques.  O'Rorke R, Lavery S, Chow S, Takeyama H, Tsai P, Beckley LE, Thompson PA, Waite AM, Jeffs AG.  (2012) PLoS One 7(8): e42757.
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Enrichment and analysis of anode-respiring bacteria from diverse anaerobic inocula.  Miceli JF, Parameswaran P, Kang DW, Krajmalnik-Brown R, Torres CI.  (2012) Environ Sci Technol ePub:
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Unique Prokaryotic Consortia in Geochemically Distinct Sediments from Red Sea Atlantis II and Discovery Deep Brine Pools.  Siam R, Mustafa GA, Sharaf H, Moustafa A, Ramadan AR, Antunes A, Bajic VB, Stingl U, Marsis NG, Coolen MJ, Sogin M, Ferreira AJ, Dorry HE.  (2012) PLoS One 7(8): e42872.
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Optimization of dengue virus genome assembling using GSFLX 454 pyrosequencing data: evaluation of assembling strategies.  Casseb SM, Cardoso JF, Ramos R, Carneiro A, Nunes M, Vasconcelos PF, Silva A.  (2012) Genet Mol Rese 11: AOP.
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Novel Somatic Mutations to PI3K Pathway Genes in Metastatic Melanoma.  Shull AY, Latham-Schwark A, Ramasamy P, Leskoske K, Oroian D, Birtwistle MR, Buckhaults PJ.  (2012) PLoS One 7(8): e43369.
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Long-term Cu exposure selects for Cu-tolerant bacterial communities with altered composition, but unaltered richness.  Berg J, Brandt KK, Al-Soud WA, Holm PE, Hansen LH, Sřrensen SJ, Nybroe O.  (2012) Appl Environ Microbiol ePub:
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High Throughput Discovery of Mutations in tef Semi-dwarfing Genes by Next Generation Sequencing Analysis.  Zhu Q, Smith SM, Ayele M, Yang L, Jogi A, Chaluvadi SR, Bennetzen JL.  (2012) Genetics ePub:
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Distinct cutaneous bacterial assemblages in a sampling of South American Amerindians and US residents.  Blaser MJ, Dominguez-Bello MG, Contreras M, Magris M, Hidalgo G, Estrada I, Gao Z, Clemente JC, Costello EK, Knight R.  (2012) ISME Journal ePub:
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Yersinia pestis infection and laboratory conditions alter flea-associated bacterial communities.  Jones RT, Vetter SM, Montenieiri J, Holmes J, Bernhardt SA, Gage KL.  (2012) ISME Journal ePub:
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Transcriptomics and comparative analysis of three antarctic notothenioid fishes.  Shin SC, Kim SJ, Lee JK, Ahn do H, Kim MG, Lee H, Lee J, Kim BK, Park H.  (2012) PLoS One 7(8): e43762.
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Compositional Stability of a Salivary Bacterial Population against Supragingival Microbiota Shift following Periodontal Therapy.  Yamanaka W, Takeshita T, Shibata Y, Matsuo K, Eshima N, Yokoyama T, Yamashita Y.  (2012) PLoS One 7(8): e42806.
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Analysis of the gut microbiota in the old order amish and its relation to the metabolic syndrome.  Zupancic ML, Cantarel BL, Liu Z, Drabek EF, Ryan KA, Cirimotich S, Jones C, Knight R, Walters WA, Knights D, Mongodin EF, Horenstein RB, Mitchell BD, Steinle N, Snitker S, Shuldiner AR, Fraser CM. (2012) PLoS One 7(8): e43052.
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Isolation and characterization of three Mammalian orthoreoviruses from European bats  Kohl C, Lesnik R, Brinkmann A, Ebinger A, Radonić A, Nitsche A, Mühldorfer K, Wibbelt G, Kurth A.  (2012) PLoS One 7(8): e43106.
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Discovery of a large set of SNP and SSR genetic markers by high-throughput sequencing of pepper (Capsicum annuum).  Nicolaď M, Pisani C, Bouchet JP, Vuylsteke M, Palloix A.  (2012) Genetic Mol Res 11(3): 2295-300.
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Global transcriptome analysis of two wild relatives of peanut under drought and fungi infection.  Guimaraes PM, Brasileiro AC, Morgante CV, Martins AC, Pappas G, Silva OB Jr, Togawa R, Leal-Bertioli SC, Araújo AC, Moretzsohn MC, Bertioli DJ.  (2012) BMC Genomics 13(1): 387.
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Pyrosequencing-based analysis reveals a novel capsular gene cluster in a KPC-producing Klebsiella pneumoniae clinical isolate identified in Brazil.  Ramos PI, Picăo RC, Vespero EC, Pelisson M, Zuleta LF, Almeida LG, Gerber AL, Vasconcelos AT, Gales AC, Nicolás MF.  (2012) BMC Microbiol 12(1): 173.
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Microfluidic PCR combined with pyrosequencing identify allelic variants with phenotypic associations in targeted Salmonella genes.  Yue M, Schmieder R, Edwards RA, Rankin SC, Schifferli DM.  (2012) Appl Environ Microbiol ePub:
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Abiotic factors shape microbial diversity in Sonoran Desert soils.  Andrew DR, Fitak RR, Munguia-Vega A, Racolta A, Martinson VG, Dontsova K.  (2012) Appl Environ Microbiol ePub:
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The Relation between Oral Candida Load and Bacterial Microbiome Profiles in Dutch Older Adults.  Kraneveld EA, Buijs MJ, Bonder MJ, Visser M, Keijser BJ, Crielaard W, Zaura E.  (2012) PLoS One (8): e42770.
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Patterns of fungal communities among and within decaying logs, revealed by 454 sequencing.  Kubartová A, Ottosson E, Dahlberg A, Stenlid J.  (2012) Mol Ecol ePub:
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RNA-Seq Analysis of the Sclerotinia homoeocarpa - Creeping Bentgrass Pathosystem.  Orshinsky AM, Hu J, Opiyo SO, Reddyvari-Channarayappa V, Mitchell TK, Boehm MJ.  (2012) PLoS One 7(8): e41150.
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Development of Microsatellite Markers Using Pyrosequencing in Galium trifidum (Rubiaceae), a Rare Species in Central Europe.  Szczecińska M, Kwaœniewski M, Sawicki J, Chwiałkowska K, Szandar K, Pisarek W.  (2012) Int J Mol Sci 13(8): 9893-9.
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Multiple regression methods show great potential for rare variant association tests.  Xu C, Ladouceur M, Dastani Z, Richards JB, Ciampi A, Greenwood CM.  (2012) PLoS One 7(8):
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SNP Discovery Using Next Generation Transcriptomic Sequencing in Atlantic Herring (Clupea harengus).  Helyar SJ, Limborg MT, Bekkevold D, Babbucci M, van Houdt J, Maes GE, Bargelloni L, Nielsen RO, Taylor MI, Ogden R, Cariani A, Carvalho GR, Consortium F, Panitz F. (2012) PLoS One 7(8): e42089.
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Transcriptome Analysis and SSR/SNP Markers Information of the Blunt Snout Bream (Megalobrama amblycephala).  Gao Z, Luo W, Liu H, Zeng C, Liu X, Yi S, Wang W. (2012) PLoS One 7(8): e42637.
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Ultra-high resolution HLA genotyping and allele discovery by highly multiplexed cDNA amplicon pyrosequencing.  Lank SM, Golbach BA, Creager HM, Wiseman RW, Keskin DB, Reinherz EL, Brusic V, O'Connor DH.  (2012) BMC Genomics 13(1): 378.
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Defining the core Arabidopsis thaliana root microbiome.  Lundberg DS, Lebeis SL, Paredes SH, Yourstone S, Gehring J, Malfatti S, Tremblay J, Engelbrektson A, Kunin V, del Rio TG, Edgar RC, Eickhorst T, Ley RE, Hugenholtz P, Tringe SG, Dangl JL.  (2012) Nature 488(7409): 86-90.
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Development of a porcine (Sus scofa) embryo-specific microarray: array annotation and validation.  Tsoi S, Zhou C, Grant JR, Pasternak AJ, Dobrinsky JR, Rigault P, Nieminen J, Sirard MA, Robert C, Foxcroft GR, Dyck MK.  (2012) BMC Genomics 13(1): 370.
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Pyrosequencing reveals spatial and species variations in bacterial communities associated with corals from the Red Sea.  Lee OO, Yang J, Bougouffa S, Wang Y, Batang Z, Tian R, Al-Suwailem A, Qian PY.  (2012) Appl Environ Microbiol ePub:
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Structural Changes of Gut Microbiota during Berberine-Mediated Prevention of Obesity and Insulin Resistance in High-Fat Diet-Fed Rats  Zhang X, Zhao Y, Zhang M, Pang X, Xu J, Kang C, Li M, Zhang C, Zhang Z, Zhang Y, Li X, Ning G, Zhao L. (2012) PLoS One 7(8): e42529.
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Genome-wide detection of spontaneous chromosomal rearrangements in bacteria.  Sun S, Ke R, Hughes D, Nilsson M, Andersson DI. (2012) PLoS One 7(8): e42639.
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Origin, diversity, and maturation of human antiviral antibodies analyzed by high-throughput sequencing.  Prabakaran P, Zhu Z, Chen W, Gong R, Feng Y, Streaker E, Dimitrov DS.  (2012) Front Microbiol 3: 277.
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Significant and persistent impact of timber harvesting on soil microbial communities in Northern coniferous forests.  Hartmann M, Howes CG, Vaninsberghe D, Yu H, Bachar D, Christen R, Henrik Nilsson R, Hallam SJ, Mohn WW.  (2012) ISME Journal ePub:
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Spatio-temporal regulation of ADAR editing during development in porcine neural tissues.  Venř M, Bramsen JB, Bendixen C, Panitz F, Holm I, Ohman M, Kjems J. (2012) RNA Biol 9(8):
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Shaping reactor microbiomes to produce the fuel precursor n-butyrate from pretreated cellulosic hydrolysates.  Agler MT, Werner JJ, Iten LB, Dekker A, Cotta MA, Dien B, Angenent LT.  (2012) Environ Sci Technol ePub:
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Testing potential effects of Bt maize on mycorrhizal fungal communities via DNA- and RNA- based pyrosequencing and molecular fingerprinting.  Verbruggen E, Kuramae EE, Hillekens R, de Hollander M, Kiers ET, Röling WF, Kowalchuk GA, van der Heijden MG.  (2012) Appl Environ Microbiol ePub:
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Development of colonic microflora as assessed by pyrosequencing in dairy calves fed waste milk.  Edrington TS, Dowd SE, Farrow RF, Hagevoort GR, Callaway TR, Anderson RC, Nisbet DJ.  (2012) J Dairy Sci 95(8): 4519-25.
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Revealing microbial community structures in large- and small-scale activated sludge systems by barcoded pyrosequencing of 16S rRNA gene.  Ranasinghe PD, Satoh H, Oshiki M, Oshima K, Suda W, Hattori M, Mino T.  (2012) Water Sci Technol 66(10): 2155-61.
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Fungal soil communities in a young transgenic poplar plantation form a rich reservoir for fungal root communities.  Danielsen L, Thürmer A, Meinicke P, Buée M, Morin E, Martin F, Pilate G, Daniel R, Polle A, Reich M.  (2012) Ecol Evol 2(8): 1935-48.
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The Saccharomyces cerevisiae W303-K6001 cross-platform genome sequence: insights into ancestry and physiology of a laboratory mutt.  Ralser M, Kuhl H, Ralser M, Werber M, Lehrach H, Breitenbach M, Timmermann B.  (2012) Open Biol 2(8):: 120093.
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Structural variants in the soybean genome localize to clusters of biotic stress-response genes.  McHale LK, Haun WJ, Xu WW, Bhaskar PB, Anderson JE, Hyten DL, Gerhardt DJ, Jeddeloh JA, Stupar RM.  (2012) Plant Physiol. 159(4): 1295-308
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Large-scale transcriptome characterization and mass discovery of SNPs in globe artichoke and its related taxa.  Scaglione D, Lanteri S, Acquadro A, Lai Z, Knapp SJ, Rieseberg L, Portis E.  (2012) Plant Biotechnol J ePub:
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Therapy failure resulting from superinfection by a drug resistant HIV variant.  Pingen M, Nouwen JL, Dinant S, Albert J, Mild M, Brodin J, Simen BB, Walsh S, Kayser M, van der Ende ME, Schutten M, Boucher CA. (2012) Antivir Ther ePub:
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Analysis of Genes Expression of Spodoptera exigua Larvae upon AcMNPV Infection.  Choi JY, Roh JY, Wang Y, Zhen Z, Tao XY, Lee JH, Liu Q, Kim JS, Shin SW, Je YH. (2012) PLoS One 7(7): e42462.
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Comparison of the Fecal Microbiota of Healthy Horses and Horses with Colitis by High Throughput Sequencing of the V3-V5 Region of the 16S rRNA Gene.  Costa MC, Arroyo LG, Allen-Vercoe E, Stämpfli HR, Kim PT, Sturgeon A, Weese JS.  (2012) PLoS One 7(7): e41484.
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Characterization of new microsatellite loci isolated from Santiria trimera (Burseraceae).  Koffi KG, Heuertz M, Jans R, Hardy OJ, Vendramin GG, Duminil J.  (2012) Am J Botany ePub:
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Pyrosequencing analysis of eukaryotic and bacterial communities in faucet biofilms.  Liu R, Yu Z, Guo H, Liu M, Zhang H, Yang M.  (2012) Sci Total Environ 435-436C: 124-131.
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Identification of Novel Transcripts Deregulated in Buccal Cancer by RNA-Seq.  Sajnani MR, Patel AK, Bhatt VD, Tripathi AK, Ahir VB, Vangipuram S, Shah S, Shah TM, Koringa PG, Jakhesara SJ, Joshi CG.  (2012) Gene ePub:
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Using metagenomic analyses to estimate the consequences of enrichment bias for pathogen detection.  Pettengill JB, McAvoy E, White JR, Allard M, Brown E, Ottesen A.  (2012) BMC Res Notes 5(1): 378.
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Microbial diversity of genital ulcer disease in men enrolled in a randomized trial of male circumcision in kisumu, kenya.  Mehta SD, Green SJ, Maclean I, Hu H, Bailey RC, Gillevet PM, Spear GT.  (2012) PLoS One 7(7): e38991.
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Evaluation of persistence of resistant variants with ultra-deep pyrosequencing in chronic hepatitis C patients treated with telaprevir.  Thomas XV, de Bruijne J, Sullivan JC, Kieffer TL, Ho CK, Rebers SP, de Vries M, Reesink HW, Weegink CJ, Molenkamp R, Schinkel J.  (2012) PLoS One 7(7): e41191.
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Pyrosequencing analysis of bacterial diversity in 14 wastewater treatment systems in China.  Wang X, Hu M, Xia Y, Wen X, Ding K.  (2012) Appl Environ Microbiol ePub:
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High-throughput amplicon sequencing reveals distinct communities within a corroding concrete sewer system.  Cayford BI, Dennis PG, Keller J, Tyson GW, Bond PL.  (2012) Appl Environ Microbiol ePub:
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Microbial community structure and activity linked to contrasting biogeochemical gradients in bog and fen environments of the Glacial Lake Agassiz Peatland.  Lin X, Green S, Tfaily MM, Prakash O, Konstantinidis KT, Corbett JE, Chanton JP, Cooper WT, Kostka JE.  (2012) Appl Environ Microbiol ePub:
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Phylogenetic stratigraphy in the Guerrero Negro hypersaline microbial mat.  Kirk Harris J, Gregory Caporaso J, Walker JJ, Spear JR, Gold NJ, Robertson CE, Hugenholtz P, Goodrich J, McDonald D, Knights D, Marshall P, Tufo H, Knight R, Pace NR.  (2012) ISME Journal ePub:
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Discovery and functional characterization of two diterpene synthases for sclareol biosynthesis in Salvia sclarea (L.) and their relevance for perfume manufacture.  Caniard A, Zerbe P, Legrand S, Cohade A, Valot N, Magnard JL, Bohlmann J, Legendre L.  (2012) BMC Plant Biol 12(1): 119.
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Characterization of a novel gyrovirus in human stool and chicken meat.  Chu DK, Poon LL, Chiu SS, Chan KH, Ng EM, Bauer I, Cheung TK, Ng IH, Guan Y, Wang D, Peiris JS.  (2012) J Clin Virol ePub:
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The human milk microbiome changes over lactation and is shaped by maternal weight and mode of delivery.  Cabrera-Rubio R, Collado MC, Laitinen K, Salminen S, Isolauri E, Mira A.  (2012) Am J Clin Nutr ePub:
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Inflammation drives dysbiosis and bacterial invasion in murine models of ileal Crohn's disease.  Craven M, Egan CE, Dowd SE, McDonough SP, Dogan B, Denkers EY, Bowman D, Scherl EJ, Simpson KW.  (2012) PLoS One 7(7): e41594.
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Complete nucleotide sequence of an Argentinean isolate of sweet potato virus G.  Rodríguez Pardina PE, Bejerman N, Luque AV, Di Feo L.  (2012) Virus Genes ePub:
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Assessment of the probiotic potential of a dairy product fermented by Propionibacterium freudenreichii in piglets.  Cousin FJ, Foligné B, Deutsch SM, Massart S, Parayre S, Le Loir Y, Boudry G, Jan G.  (2012) J Agric Food Chem ePub:
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Distinct Soil Bacterial Communities Revealed under a Diversely Managed Agroecosystem.  Shange RS, Ankumah RO, Ibekwe AM, Zabawa R, Dowd SE.  (2012) PLoS One 7(7): e40338.
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Pyrosequencing-based transcriptomic resources in the pond snail Lymnaea stagnalis, with a focus on genes involved in molecular response to diquat-induced stress.  Bouétard A, Noirot C, Besnard AL, Bouchez O, Choisne D, Robe E, Klopp C, Lagadic L, Coutellec MA.  (2012) Ecotoxicology ePub:
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Storage conditions of intestinal microbiota matter in metagenomic analysis.  Cardona S, Eck A, Cassellas M, Gallart M, Alastrue C, Dore J, Azpiroz F, Roca J, Guarner F, Manichanh C.  (2012) BMC Microbiol 12(1): 158.
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Minority variants associated with resistance to HIV-1 nonnucleoside reverse transcriptase inhibitors during primary infection.  Nicot F, Saliou A, Raymond S, Sauné K, Dubois M, Massip P, Marchou B, Delobel P, Izopet J.  (2012) J Clin Virol ePub:
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The Colonic Mucosal Microbiome Differs from Stool Microbiome in Cirrhosis and Hepatic Encephalopathy and is Linked to Cognition and Inflammation.  Bajaj JS, Hylemon PB, Ridlon JM, Heuman DM, Daita K, White MB, Monteith P, Noble NA, Sikaroodi M, Gillevet PM.  (2012) Am J Physiol Gastrointest Liver Physiol ePub:
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High-throughput multilocus sequence typing: bringing molecular typing to the next level.  Boers SA, van der Reijden WA, Jansen R.  (2012) PLoS One 7(7): e39630.
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Molecular surveillance and phylogenetic analysis of Old World Arenaviruses in Zambia.  Ishii A, Thomas Y, Moonga L, Nakamura I, Ohnuma A, Hang Ombe BM, Takada A, Mweene AS, Sawa H.  (2012) J Gen Virology ePub:
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Genetic characterization of Bhanja virus and Palma virus, two tick-borne phleboviruses.  Dilcher M, Alves MJ, Finkeisen D, Hufert F, Weidmann M. (2012) Virus Genes ePub:
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A fast, highly sensitive double-nested PCR-based method to screen fish immunobiomes.  Boutin S, Sevellec M, Pavey SA, Bernatchez L, Derome N.  (2012) Mol Ecol Resour ePub:
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Changes in bowel microbiota induced by feeding resistant starch stimulate transcriptomic and physiological responses in the weanling host.  Young W, Roy NC, Lee J, Lawley B, Otter D, Henderson G, McCann MJ, Tannock GW. (2012) Appl Environ Microbiol ePub:
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Abundance of Beta-Proteobacteria on mineral surfaces correlates with mineral weathering in forest soils.  Lepleux C, Turpault MP, Oger P, Frey-Klett P, Uroz S.  (2012) Appl Environ Microbiol ePub:
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The identification of soil bacteria susceptible to TiO2 and ZnO nanoparticles.  Ge Y, Schimel JP, Holden PA.  (2012) Appl Environ Microbiol ePub:
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Dissolved Organic Carbon Influences Microbial Community Composition and Diversity in Managed Aquifer Recharge Systems.  Li D, Sharp JO, Saikaly PE, Ali S, Alidina M, Alarawi MS, Keller S, Hoppe-Jones C, Drewes JE.  (2012) Appl Environ Microbiol ePub:
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Characterization of European Sea Bass Transcripts by RNA SEQ After Oral Vaccine Against V. anguillarum.  Sarropoulou E, Galindo-Villegas J, García-Alcázar A, Kasapidis P, Mulero V.  (2012) Mar Biotechnol (NY) ePub:
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Identification of bacteria utilizing biphenyl, benzoate, and naphthalene in long-term contaminated soil.  Uhlik O, Wald J, Strejcek M, Musilova L, Ridl J, Hroudova M, Vlcek C, Cardenas E, Mackova M, Macek T.  (2012) PLoS One 7(7): e40653.
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Importance of rare taxa for bacterial diversity in the rhizosphere of Bt- and conventional maize varieties.  Dohrmann AB, Küting M, Jünemann S, Jaenicke S, Schlüter A, Tebbe CC.  (2012) ISME Journal ePub:
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Ecology of root colonizing massilia (oxalobacteraceae).  Ofek M, Hadar Y, Minz D. (2012) PLoS One 7(7): e40117.
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Microbialite genetic diversity and composition relate to environmental variables.  Centeno CM, Legendre P, Beltrán Y, Alcántara-Hernández RJ, Lidström UE, Ashby MN, Falcón LI.  (2012) FEMS Microbiol Ecol ePub:
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De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco hyemalis): Genomic tools for an ecological model system.  erson MP, Whittaker DJ, Ambreth S, Sureshchandra S, Buechlein A, Podicheti R, Choi JH, Lai Z, Mockatis K, Colbourne JK, Tang H, Ketterson ED.  (2012) BMC Genomics 13(1): 305.
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Effect of increased pCO(2) on bacterial assemblage shifts in response to glucose addition in Fram Strait seawater mesocosms.  Ray JL, Töpper B, An S, Silyakova A, Spindelböck J, Thyrhaug R, Dubow MS, Frede Thingstad T, Sandaa RA. (2012) FEMS Microbiol Ecol ePub:
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Linking fungal communities in roots, rhizosphere and soil to the health status of Pisum sativum.  Xu L, Ravnskov S, Larsen J, Nicolaisen M.  (2012) FEMS Microbiol Ecol ePub:
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Impact of short-term acidification on nitrification and nitrifying bacterial community dynamics in soilless cultivation media.  Cytryn E, Levkovitch I, Negreanu Y, Dowd S, Frenk S, Silber A.  (2012) Appl Environ Microbiol ePub:
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Enzymatic synthesis of valerena-4,7(11)-diene by a unique sesquiterpene synthase from valerian plant (Valeriana officinalis).  Pyle BW, Tran HT, Pickel B, Haslam T, Gao Z, Macnevin G, Vederas JC, Kim SU, Ro DK.  (2012) FEBS J ePub:
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Distinctive Bacterial Communities in the Rhizoplane of Four Tropical Tree Species.  Oh YM, Kim M, Lee-Cruz L, Lai-Hoe A, Go R, Ainuddin N, Rahim RA, Shukor N, Adams JM.  (2012) Microb Ecol ePub:
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Detection of haemagglutinin D222 polymorphisms in influenza A(H1N1)pdm09-infected patients by ultra-deep pyrosequencing.  Selleri M, Piralla A, Rozera G, Giombini E, Bartolini B, Abbate I, Campanini G, Rovida F, Dossena L, Capobianchi MR, Baldanti F.  (2012) Clin Microbiol Infect ePub:
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Complete nucleotide sequence of the multidrug resistance IncA/C plasmid pR55 from Klebsiella pneumoniae isolated in 1969.  Doublet B, Boyd D, Douard G, Praud K, Cloeckaert A, Mulvey MR. (2012) J Antimicrob Chemother ePub:
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Utilizing pyrosequencing and quantitative PCR to characterize fungal populations among house dust samples.  Nonnenmann MW, Coronado G, Thompson B, Griffith WC, Hanson JD, Vesper S, Faustman EM.  (2012) J Environ Monit ePub:
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Single nucleotide polymorphism discovery from wheat next-generation sequence data.  Lai K, Duran C, Berkman PJ, Lorenc MT, Stiller J, Manoli S, Hayden MJ, Forrest KL, Fleury D, Baumann U, Zander M, Mason AS, Batley J, Edwards D.  (2012) Plant Biotechnol J ePub:
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The Role of Clonal Interference in the Evolutionary Dynamics of Plasmid-Host Adaptation.  Hughes JM, Lohman BK, Deckert GE, Nichols EP, Settles M, Abdo Z, Top EM.  (2012) MBio 3(4): e00077-12.
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Novel microsatellite loci for Agave parryi and cross-amplification in Agave palmeri (Agavaceae).  Lindsay DL, Edwards CE, Jung MG, Bailey P, Lance RF. (2012) Am J Botany ePub:
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Transcriptome survey of Patagonian southern beech Nothofagus nervosa (= N. alpina): assembly, annotation and molecular marker discovery.  Torales SL, Rivarola M, Pomponio MF, Fernández P, Acuńa CV, Marchelli P, Gonzalez S, Azpilicueta MM, Hopp HE, Gallo LA, Paniego NB, Marcucci Poltri SN.  (2012) BMC Genomics 13(1): 291.
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Taxonomic and Functional Microbial Signatures of the Endemic Marine Sponge Arenosclera brasiliensis.  Trindade-Silva AE, Rua C, Silva GG, Dutilh BE, Moreira AP, Edwards RA, Hajdu E, Lobo-Hajdu G, Vasconcelos AT, Berlinck RG, Thompson FL.  (2012) PLoS One 7(7): e39905.
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Properties and secretory mechanism of Musca domestica digestive chymotrypsin and its relation with Drosophila melanogaster homologs.  Tamaki FK, Padilha MH, Pimentel AC, Ribeiro AF, Terra WR.  (2012) Insect Biochem Mol Biol 42(7): 482-90.
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Draft genome sequence of the human pathogen Streptomyces somaliensis, a significant cause of actinomycetoma.  Kirby R, Sangal V, Tucker NP, Zakrzewska-Czerwinska J, Wierzbicka K, Herron PR, Chu CJ, Chandra G, Fahal AH, Goodfellow M, Hoskisson PA.  (2012) J Bacteriology 194(13): 3544-5.
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The human small intestinal microbiota is driven by rapid uptake and conversion of simple carbohydrates.  Zoetendal EG, Raes J, van den Bogert B, Arumugam M, Booijink CC, Troost FJ, Bork P, Wels M, de Vos WM, Kleerebezem M.  (2012) ISME Journal 6(7): 1415-26.
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Influence of nutrients and currents on the genomic composition of microbes across an upwelling mosaic.  Allen LZ, Allen EE, Badger JH, McCrow JP, Paulsen IT, Elbourne LD, Thiagarajan M, Rusch DB, Nealson KH, Williamson SJ, Venter JC, Allen AE.  (2012) ISME Journal 6(7): 1403-14.
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Coral-associated marine fungi form novel lineages and heterogeneous assemblages.  Amend AS, Barshis DJ, Oliver TA.  (2012) ISME Journal 6(7): 1291-301.
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HLA DNA typing: past, present, and future.  Erlich H. (2012) Tissue Antigens 80(1): 1-11.
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Gut microbiota correlates with energy gain from dietary fibre and appears to be associated with acute and chronic intestinal diseases.  Ukhanova M, Culpepper T, Baer D, Gordon D, Kanahori S, Valentine J, Neu J, Sun Y, Wang X, Mai V.  (2012) Clin Microbiol Infect 18 Suppl 4: 62-6.
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Changes in the intestinal microbiota from adulthood through to old age.  O'Toole PW.  (2012) Clin Microbiol Infect 18 Suppl 4: 44-6.
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Identifying a healthy oral microbiome through metagenomics.  Alcaraz LD, Belda-Ferre P, Cabrera-Rubio R, Romero H, Simón-Soro A, Pignatelli M, Mira A.  (2012) Clin Microbiol Infect 18 Suppl 4: 54-7.
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Transcriptome analysis of the honey bee fungal pathogen, Ascosphaera apis: implications for host pathogenesis.  Cornman RS, Bennett AK, Murray KD, Evans JD, Elsik CG, Aronstein KA.  (2012) BMC Genomics 13(1): 285.
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Distance-Decay diversity patterns of phyllosphere bacteria on Tamarisk trees across the Sonoran Desert.  Finkel OM, Burch AY, Elad T, Huse SM, Lindow SE, Post AF, Belkin S.  (2012) Appl Environ Microbiol ePub:
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Upper respiratory tract microbial communities, acute otitis media pathogens and antibiotic use in healthy and sick children.  Pettigrew MM, Laufer AS, Gent JF, Kong Y, Fennie KP, Metlay JP.  (2012) Appl Environ Microbiol ePub:
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The Prevalence Of Streptococci And Increased Polymicrobial Diversity Associated With Cystic Fibrosis Patient Stability.  Filkins LM, Hampton TH, Gifford AH, Gross MJ, Hogan DA, Sogin ML, Morrison HG, Paster BJ, O'Toole GA.  (2012) J Bacteriology ePub:
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Biodiversity of Prokaryotic Communities Associated with the Ectoderm of Ectopleura crocea (Cnidaria, Hydrozoa).  Di Camillo CG, Luna GM, Bo M, Giordano G, Corinaldesi C, Bavestrello G.  (2012) PLoS One 7(6): e39926.
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Microplanktonic community structure in a coastal system relative to a phaeocystis bloom inferred from morphological and tag pyrosequencing methods.  Monchy S, Grattepanche JD, Breton E, Meloni D, Sanciu G, Chabé M, Delhaes L, Viscogliosi E, Sime-Ngando T, Christaki U.  (2012) PLoS One 7(6): e39924.
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The arthropod, but not the vertebrate host or its environment, dictates bacterial community composition of fleas and ticks.  Hawlena H, Rynkiewicz E, Toh E, Alfred A, Durden LA, Hastriter MW, Nelson DE, Rong R, Munro D, Dong Q, Fuqua C, Clay K.  (2012) ISME Journal ePub:
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Lake microbial communities are resilient after a whole-ecosystem disturbance.  Shade A, Read JS, Youngblut ND, Fierer N, Knight R, Kratz TK, Lottig NR, Roden EE, Stanley EH, Stombaugh J, Whitaker RJ, Wu CH, McMahon KD.  (2012) ISME Journal ePub:
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Human Intestinal Lumen and Mucosa-Associated Microbiota in Patients with Colorectal Cancer.  Chen W, Liu F, Ling Z, Tong X, Xiang C.  (2012) PLoS One 7(6): e39743.
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Identification of MW polyomavirus, a novel polyomavirus in human stool.  Siebrasse EA, Reyes A, Lim ES, Zhao G, Mkakosya RS, Manary MJ, Gordon JI, Wang D.  (2012) J Virology ePub:
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Development of polymorphic microsatellite markers issued from pyrosequencing technology for the medicinal mushroom Agaricus subrufescens.  Foulongne-Oriol M, Spataro C, Moinard M, Cabannes D, Callac P, Savoie JM.  (2012) FEMS Microbiol Lett ePub:
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Large-scale collection and annotation of gene models for date palm (Phoenix dactylifera, L.).  Zhang G, Pan L, Yin Y, Liu W, Huang D, Zhang T, Wang L, Xin C, Lin Q, Sun G, Ba Abdullah MM, Zhang X, Hu S, Al-Mssallem IS, Yu J.  (2012) Plant Mol Biol ePub:
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Exome sequencing identifies recurrent somatic RAC1 mutations in melanoma.  Cromer MK, Starker LF, Choi M, Udelsman R, Nelson-Williams C, Lifton RP, Carling T.  (2012) J Clin Endocrinol Metab. 97(9): epub
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A high-throughput next-generation sequencing-based method for detecting the mutational fingerprint of carcinogens.  Besaratinia A, Li H, Yoon JI, Zheng A, Gao H, Tommasi S.  (2012) Nucleic Acids Research ePub:
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New primers to amplify the fungal ITS2 region - evaluation by 454-sequencing of artificial and natural communities.  Ihrmark K, Bödeker IT, Cruz-Martinez K, Friberg H, Kubartova A, Schenck J, Strid Y, Stenlid J, Brandström-Durling M, Clemmensen KE, Lindahl BD.  (2012) FEMS Microbiol Ecol ePub:
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Identification and characterization of a cellulase-encoding gene from the buffalo rumen metagenomic library.  Nguyen NH, Maruset L, Uengwetwanit T, Mhuantong W, Harnpicharnchai P, Champreda V, Tanapongpipat S, Jirajaroenrat K, Rakshit SK, Eurwilaichitr L, Pongpattanakitshote S.  (2012) Biosci Biotechnol Biochem 76(6): 1075-84.
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Metagenome analyses of corroded concrete wastewater pipe biofilms reveals a complex microbial system.  Gomez-Alvarez V, Revetta RP, Santo Domingo JW.  (2012) BMC Microbiol 12(1): 122.
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Pyrosequencing-Derived Bacterial, Archaeal, and Fungal Diversity of Spacecraft Hardware Destined for Mars.  La Duc MT, Vaishampayan P, Nilsson HR, Torok T, Venkateswaran K.  (2012) Appl Environ Microbiol ePub:
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Metagenomic Analyses of Drinking Water Receiving Different Disinfection Treatments.  Gomez-Alvarez V, Revetta RP, Santo Domingo JW.  (2012) Appl Environ Microbiol ePub:
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Molecular analysis of meso- and thermophilic microbiota associated with anaerobic biowaste degradation.  Ritari J, Koskinen K, Hultman J, Kurola JM, Kymäläinen M, Romantschuk M, Paulin L, Auvinen P.  (2012) BMC Microbiol 12(1):: 121.
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Airborne transmission of influenza A/H5N1 virus between ferrets.  Herfst S, Schrauwen EJ, Linster M, Chutinimitkul S, de Wit E, Munster VJ, Sorrell EM, Bestebroer TM, Burke DF, Smith DJ, Rimmelzwaan GF, Osterhaus AD, Fouchier RA.  (2012) Science 336(6088): 1534-41.
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Metagenomes of the picoalga bathycoccus from the chile coastal upwelling.  Vaulot D, Lepčre C, Toulza E, De la Iglesia R, Poulain J, Gaboyer F, Moreau H, Vandepoele K, Ulloa O, Gavory F, Piganeau G.  (2012) PLoS One 7(6): e39648.
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The microbiome of brazilian mangrove sediments as revealed by metagenomics.  Andreote FD, Jiménez DJ, Chaves D, Dias AC, Luvizotto DM, Dini-Andreote F, Fasanella CC, Lopez MV, Baena S, Taketani RG, de Melo IS.  (2012) PLoS One 7(6): e38600.
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Intestinal Domination and the Risk of Bacteremia in Patients Undergoing Allogeneic Hematopoietic Stem Cell Transplantation.  Taur Y, Xavier JB, Lipuma L, Ubeda C, Goldberg J, Gobourne A, Lee YJ, Dubin KA, Socci ND, Viale A, Perales MA, Jenq RR, van den Brink M, Pamer EG.  (2012) Clin Infect Dis ePub:
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Field Monitoring of Avian Influenza Viruses: Whole Genome Sequencing and Tracking of Neuraminidase Evolution Using 454 Pyrosequencing.  Croville G, Soubies SM, Barbieri J, Klopp C, Mariette J, Bouchez O, Camus-Bouclainville C, Guerin JL.  (2012) J Clin Microbiol ePub:
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A proline repeat polymorphism of the Frost gene of Drosophila melanogaster showing clinal variation but not associated with cold resistance.  Hoffmann AA, Blacket MJ, McKechnie SW, Rako L, Schiffer M, Rane RV, Good RT, Robin C, Lee SF.  (2012) Insect Mol Biol ePub:
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Isolation and Characterization of Simple Sequence Repeats (SSR) Markers from the Moss Genus Orthotrichum Using a Small Throughput Pyrosequencing Machine.  Sawicki J, Kwaœniewski M, Szczecińska M, Chwiałkowska K, Milewicz M, Plášek V.  (2012) Int J Mol Sci 13(6): 7586-93.
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Genome fragmentation is not confined to the peridinin plastid in dinoflagellates.  Espelund M, Minge MA, Gabrielsen TM, Nederbragt AJ, Shalchian-Tabrizi K, Otis C, Turmel M, Lemieux C, Jakobsen KS.  (2012) PLoS One (6): e38809.
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Bacterial communities in women with bacterial vaginosis: high resolution phylogenetic analyses reveal relationships of microbiota to clinical criteria.  Srinivasan S, Hoffman NG, Morgan MT, Matsen FA, Fiedler TL, Hall RW, Ross FJ, McCoy CO, Bumgarner R, Marrazzo JM, Fredricks DN.  (2012) PLoS One 7(6): e37818.
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Microsatellite markers for the characterization of native and introduced populations of Plasmopara viticola, the causal agent of grapevine downy mildew.  Rouxel M, Papura D, Nogueira M, Machefer V, Dezette D, Richard-Cervera S, Carrere S, Mestre P, Delmotte F.  (2012) Appl Environ Microbiol ePub:
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Fine-Scale Community Structure Analysis of ANME in Nyegga Sediments with High and Low Methane Flux.  Roalkvam I, Dahle H, Chen Y, Jřrgensen SL, Haflidason H, Steen IH. (2012) Front Microbiol 3: 216.
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Host genetic and environmental effects on mouse intestinal microbiota.  Campbell JH, Foster CM, Vishnivetskaya T, Campbell AG, Yang ZK, Wymore A, Palumbo AV, Chesler EJ, Podar M.  (2012) ISME Journal ePub:
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Microbiota Separation and C-reactive protein Elevation in Treatment Naďve Pediatric Granulomatous Crohn Disease.  Kellermayer R, Mir SA, Nagy-Szakal D, Cox SB, Dowd SE, Kaplan JL, Sun Y, Reddy S, Bronsky J, Winter HS.  (2012) J Pediatr Gastroenterol Nutr ePub:
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Proteomic analysis of Frankliniella occidentalis and differentially-expressed proteins in response to Tomato spotted wilt virus infection.  Badillo-Vargas IE, Rotenberg D, Schneweis DJ, Hiromasa Y, Tomich JM, Whitfield AE.  (2012) J Virology ePub:
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Structure, function and diversity of the healthy human microbiome.  Human Microbiome Project Consortium.  (2012) Nature 6(7402): 207-14.
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Evaluation of 16S rDNA-Based Community Profiling for Human Microbiome Research.  Jumpstart Consortium Human Microbiome Project Data Generation Working Group.  (2012) PLoS One 7(6): e39315. .
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Analyses of the Microbial Diversity across the Human Microbiome.  Li K, Bihan M, Yooseph S, Methé BA.  (2012) PLoS One 7(6): e32118.
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Inflammatory Bowel Diseases Phenotype, C. difficile and NOD2 Genotype Are Associated with Shifts in Human Ileum Associated Microbial Composition.  Li E, Hamm CM, Gulati AS, Sartor RB, Chen H, Wu X, Zhang T, Rohlf FJ, Zhu W, Gu C, Robertson CE, Pace NR, Boedeker EC, Harpaz N, Yuan J, Weinstock GM, Sodergren E, Frank DN.  (2012) PLoS One 7(6): e26284.
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An eight-year investigation of bovine livestock fecal microbiota.  Rudi K, Moen B, Sekelja M, Frisli T, Lee MR.  (2012) Vet Microbiol ePub:
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Pyrosequencing of Bacterial Symbionts within Axinella corrugata Sponges: Diversity and Seasonal Variability.  White JR, Patel J, Ottesen A, Arce G, Blackwelder P, Lopez JV.  (2012) PLoS One 7(6): e38204.
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Capturing greater 16S rRNA gene sequence diversity within the Bacteria domain.  Winsley T, van Dorst JM, Brown MV, Ferrari BC.  (2012) Appl Environ Microbiol ePub:
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Functional Analyses of Human and Chicken Gut Microbiotas: Chicken Microbiotas Produce Higher Levels of Volatile Fatty Acids in Vitro.  Lei F, Yin Y, Wang Y, Deng B, Yu HD, Li L, Xiang C, Wang S, Zhu B, Wang X.  (2012) Appl Environ Microbiol ePub:
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Interactions between commensal fungi and the C-type lectin receptor Dectin-1 influence colitis.  Iliev ID, Funari VA, Taylor KD, Nguyen Q, Reyes CN, Strom SP, Brown J, Becker CA, Fleshner PR, Dubinsky M, Rotter JI, Wang HL, McGovern DP, Brown GD, Underhill DM.  (2012) Science 336(6086): 1314-7.
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Geographic distance and pH drive bacterial distribution in alkaline lake sediments across Tibetan Plateau.  Xiong J, Liu Y, Lin X, Zhang H, Zeng J, Hou J, Yang Y, Yao T, Knight R, Chu H.  (2012) Environ Microbiol ePub:
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Autosomal recessive lethal congenital contractural syndrome type 4 (LCCS4) caused by a mutation in MYBPC1.  Markus B, Narkis G, Landau D, Birk RZ, Cohen I, Birk OS.  (2012) Hum Mutat. 33(10): 1435-8.
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Transcriptome sequencing of wild chickpea as a rich resource for marker development.  Jhanwar S, Priya P, Garg R, Parida SK, Tyagi AK, Jain M.  (2012) Plant Biotechnol J ePub:
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Microbial and chemical characterization of underwater fresh water springs in the dead sea.  Ionescu D, Siebert C, Polerecky L, Munwes YY, Lott C, Häusler S, Bižić-Ionescu M, Quast C, Peplies J, Glöckner FO, Ramette A, Rödiger T, Dittmar T, Oren A, Geyer S, Stärk HJ, Sauter M, Licha T, Laronne JB, de Beer D.  (2012) PLoS One 7(6): e38319.
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Assessment of microbial diversity in biofilms recovered from endotracheal tubes using culture dependent and independent approaches.  Vandecandelaere I, Matthijs N, Van Nieuwerburgh F, Deforce D, Vosters P, De Bus L, Nelis HJ, Depuydt P, Coenye T.  (2012) PLoS One 7(6): e38401.
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High accuracy mutation detection in leukemia on a selected panel of cancer genes.  Kalender Atak Z, De Keersmaecker K, Gianfelici V, Geerdens E, Vandepoel R, Pauwels D, Porcu M, Lahortiga I, Brys V, Dirks WG, Quentmeier H, Cloos J, Cuppens H, Uyttebroeck A, Vandenberghe P, Cools J, Aerts S. (2012) PLoS One 7(6): e38463.
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Effects of season and experimental warming on the bacterial community in a temperate mountain forest soil assessed by 16S rRNA gene pyrosequencing.  Kuffner M, Hai B, Rattei T, Melodelima C, Schloter M, Zechmeister-Boltenstern S, Jandl R, Schindlbacher A, Sessitsch A.  (2012) FEMS Microbiol Ecol ePub:
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Comparative Genomic Analysis of Primary Versus Metastatic Colorectal Carcinomas.  Vakiani E, Janakiraman M, Shen R, Sinha R, Zeng Z, Shia J, Cercek A, Kemeny N, D'Angelica M, Viale A, Heguy A, Paty P, Chan TA, Saltz LB, Weiser M, Solit DB.  (2012) J Clin Oncology ePub:
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Sequence-independent VIDISCA-454 technique to discover new viruses in canine livers.  van der Heijden M, de Vries M, van Steenbeek FG, Favier RP, Deijs M, Brinkhof B, Rothuizen J, van der Hoek L, Penning LC.  (2012) J Virology Methods ePub:
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Denaturing gradient gel electrophoresis (DGGE) and barcoded-pyrosequencing reveal unprecedented archaeal diversity in mangrove sediment and rhizosphere samples.  Pires AC, Cleary DF, Almeida A, Cunha A, Dealtry S, Mendonça-Hagler LC, Smalla K, Gomes NC.  (2012) Appl Environ Microbiol ePub:
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Microbial diversity of biofilm communities in microniches associated with the didemnid ascidian Lissoclinum patella.  Behrendt L, Larkum AW, Trampe E, Norman A, Sřrensen SJ, Kühl M.  (2012) ISME Journal 6(6): 1222-37.
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The Western English Channel contains a persistent microbial seed bank.  Caporaso JG, Paszkiewicz K, Field D, Knight R, Gilbert JA. (2012) ISME Journal 6(6): 1089-93
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Analysis of hepatitis B virus drug-resistant mutant haplotypes by ultra-deep pyrosequencing.  Ko SY, Oh HB, Park CW, Lee HC, Lee JE.  (2012) Clin Microbiol Infect ePub:
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What can we learn about lyssavirus genomes using 454 sequencing?  Höper D, Finke S, Freuling CM, Hoffmann B, Beer M (2012) Berl Munch Tierarztl Wochensch 125(5-6): 242-8.
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Draft genome of a Brazilian avian-pathogenic Escherichia coli strain and in silico characterization of virulence-related genes.  Rojas TC, Parizzi LP, Tiba MR, Chen L, Pereira GA, Sangal V, Yang J, Yu J, Dias da Silveira W.  (2012) J Bacteriology 194(11): 3023.
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Ultra-deep sequencing reveals hidden HIV-1 minority lineages and shifts of viral population between the main cellular reservoirs of the infection after therapy interruption.  Rozera G, Abbate I, Ciccozzi M, Lo Presti A, Bruselles A, Vlassi C, D'Offizi G, Narciso P, Giombini E, Bartolini B, Ippolito G, Capobianchi MR.  (2012) J Med Virology 84(6): 839-44.
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Using high throughput sequencing to explore the biodiversity in oral bacterial communities.  Diaz PI, Dupuy AK, Abusleme L, Reese B, Obergfell C, Choquette L, Dongari-Bagtzoglou A, Peterson DE, Terzi E, Strausbaugh LD.  (2012) Mol Oral Microbiol 27(3): 182-201.
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Complete genome sequence of the giant pseudomonas phage lu11.  Adriaenssens EM, Mattheus W, Cornelissen A, Shaburova O, Krylov VN, Kropinski AM, Lavigne R.  (2012) J Virology 86(11): 6369-70.
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Genome and proteome analysis of 7-7-1, a flagellotropic phage infecting Agrobacterium sp H13-3.  Kropinski AM, Van den Bossche A, Lavigne R, Noben JP, Babinger P, Schmitt R.  (2012) Virology Journal 9(1):: 102.
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Bacterial communities in the sediments of dianchi lake, a partitioned eutrophic waterbody in china.  Bai Y, Shi Q, Wen D, Li Z, Jefferson WA, Feng C, Tang X.  (2012) PLoS One 7(5): e37796.
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Office space bacterial abundance and diversity in three metropolitan areas.  Hewitt KM, Gerba CP, Maxwell SL, Kelley ST.  (2012) PLoS One 7(5): e37849.
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Ultra-deep pyrosequencing detects conserved genomic sites and quantifies linkage of drug-resistant amino Acid changes in the hepatitis B virus genome.  Rodriguez-Frías F, Tabernero D, Quer J, Esteban JI, Ortega I, Domingo E, Cubero M, Camós S, Ferrer-Costa C, Sánchez A, Jardí R, Schaper M, Homs M, Garcia-Cehic D, Guardia J, Esteban R, Buti M.  (2012) PLoS One 7(5): e37874.
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Current state of knowledge: the canine gastrointestinal microbiome.  Hooda S, Minamoto Y, Suchodolski JS, Swanson KS.  (2012) Anim Health Res Rev 1-11.:
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454 Pyrosequencing Reveals a Shift in Fecal Microbiota of Healthy Adult Men Consuming Polydextrose or Soluble Corn Fiber.  Hooda S, Boler Vester BM, Serao Rossoni MC, Brulc JM, Staeger MA, Boileau TW, Dowd SE, Fahey GC Jr, Swanson KS.  (2012) J Nutrition ePub:
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Sliding window analyses for optimal selection of mini-barcodes, and application to 454-pyrosequencing for specimen identification from degraded DNA.  Boyer S, Brown SD, Collins RA, Cruickshank RH, Lefort MC, Malumbres-Olarte J, Wratten SD.  (2012) PLoS One 7(5): e38215.
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Assessment of the specificity of Burkholderia and Pseudomonas qPCR assays for detection of these genera in soil using 454 pyrosequencing.  Bergmark L, Poulsen PH, Al-Soud WA, Norman A, Hansen LH, Sřrensen SJ.  (2012) FEMS Microbiol Lett ePub:
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Whole Genome Sequencing to Investigate the Emergence of Clonal Complex 23 Neisseria meningitidis Serogroup Y Disease in the United States.  Krauland MG, Dunning Hotopp JC, Riley DR, Daugherty SC, Marsh JW, Messonnier NE, Mayer LW, Tettelin H, Harrison LH.  (2012) PLoS One 7(4): e35699.
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Characterization of geographically distinct bacterial communities associated with the coral mucus from Acropora spp. and Porites spp.  McKew B, Dumbrell AJ, Daud SD, Hepburn L, Thorpe E, Morgensen L, Whitby C.  (2012) Appl Environ Microbiol ePub:
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Pyrosequencing-Based Comparative Genome Analysis of Vibrio vulnificus Environmental Isolates.  Morrison SS, Williams T, Cain A, Froelich B, Taylor C, Baker-Austin C, Verner-Jeffreys D, Hartnell R, Oliver JD, Gibas CJ.  (2012) PLoS One 7(5): e37553.
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Comparison of storage conditions for human vaginal microbiome studies.  Bai G, Gajer P, Nandy M, Ma B, Yang H, Sakamoto J, Blanchard MH, Ravel J, Brotman RM.  (2012) PLoS One 7(5): e36934.
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Full-Exon Pyrosequencing Screening of BRCA Germline Mutations in Mexican Women with Inherited Breast and Ovarian Cancer.  Vaca-Paniagua F, Alvarez-Gomez RM, Fragoso-Ontiveros V, Vidal-Millan S, Herrera LA, Cantú D, Bargallo-Rocha E, Mohar A, López-Camarillo C, Pérez-Plasencia C.  (2012) PLoS One 7(5): e37432.
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Intestinal aganglionosis is associated with early and sustained disruption of the colonic microbiome.  Ward NL, Pieretti A, Dowd SE, Cox SB, Goldstein AM.  (2012) Neurogastroenterol Motil ePub:
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Increased rectal microbial richness is associated with the presence of colorectal adenomas in humans.  Sanapareddy N, Legge RM, Jovov B, McCoy A, Burcal L, Araujo-Perez F, Randall TA, Galanko J, Benson A, Sandler RS, Rawls JF, Abdo Z, Fodor AA, Keku TO.  (2012) ISME Journal ePub:
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A novel bat herpesvirus encodes homologues of MHC classes I and II, C-type lectin, and a unique family of immune-related genes.  Zhang H, Todd S, Tachedjian M, Barr JA, Luo M, Yu M, Marsh GA, Crameri G, Wang LF.  (2012) J Virology ePub:
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Gut Bacterial Translocation Contributes to Microinflammation in Experimental Uremia.  Wang F, Zhang P, Jiang H, Cheng S.  (2012) Digestive Diseases and Sciences ePub:
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Microsatellite markers for Bistorta vivipara (Polygonaceae).  Vik U, Carlsen T, Eidesen PB, Brysting AK, Kauserud H. (2012) Am J Botany ePub:
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Genome-wide association study identified three major QTL for carcass weight including the PLAG1-CHCHD7 QTN for stature in Japanese Black cattle.  Nishimura S, Watanabe T, Mizoshita K, Tatsuda K, Fujita T, Watanabe N, Sugimoto Y, Takasuga A.  (2012) BMC Genet. 13:40:
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Exome sequencing generates high quality data in non-target regions.  Guo Y, Long J, He J, Li CI, Cai Q, Shu XO, Zheng W, Li C.  (2012) BMC Genomics. 13:
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High-Throughput Sequence Analysis of Turbot (Scophthalmus maximus) Transcriptome Using 454-Pyrosequencing for the Discovery of Antiviral Immune Genes.  Pereiro P, Balseiro P, Romero A, Dios S, Forn-Cuni G, Fuste B, Planas JV, Beltran S, Novoa B, Figueras A.  (2012) PLoS One 7(5): e35369.
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Comparison of mixed-acid fermentations inoculated with six different mixed cultures.  Forrest AK, Hollister EB, Gentry TJ, Wilkinson HH, Holtzapple MT.  (2012) Bioresour Technol 118C: 343-349,
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Nitrification of archaeal ammonia oxidizers in acid soils is supported by hydrolysis of urea.  Lu L, Han W, Zhang J, Wu Y, Wang B, Lin X, Zhu J, Cai Z, Jia Z.  (2012) ISME Journal ePub:
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Coral-Bacterial Communities before and after a Coral Mass Spawning Event on Ningaloo Reef.  Ceh J, Raina JB, Soo RM, van Keulen M, Bourne DG.  (2012) PLoS One 7(5): e36920.
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A genome-wide analysis of lentivector integration sites using targeted sequence capture and next generation sequencing technology.  Ustek D, Sirma S, Gumus E, Arikan M, Cakiris A, Abaci N, Mathew J, Emrence Z, Azakli H, Cosan F, Cakar A, Parlak M, Kursun O.  (2012) Infect Genet Evol ePub:
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Molecular tracing of the emergence, adaptation, and transmission of hospital-associated methicillin-resistant Staphylococcus aureus.  McAdam PR, Templeton KE, Edwards GF, Holden MT, Feil EJ, Aanensen DM, Bargawi HJ, Spratt BG, Bentley SD, Parkhill J, Enright MC, Holmes A, Girvan EK, Godfrey PA, Feldgarden M, Kearns AM, Rambaut A, Robinson DA, Fitzgerald JR.  (2012) PNAS ePub:
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Auxin and ABA act as central regulators of developmental networks associated with paradormancy in Canada thistle (Cirsium arvense).  Anderson JV, Dođramacý M, Horvath DP, Foley ME, Chao WS, Suttle JC, Thimmapuram J, Hernandez AG, Ali S, Mikel MA. (2012) Funct Integr Genomics ePub:
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Alkane Biodegradation Genes from Chronically Polluted Subantarctic Coastal Sediments and Their Shifts in Response to Oil Exposure.  Guibert LM, Loviso CL, Marcos MS, Commendatore MG, Dionisi HM, Lozada M.  (2012) Microb Ecol ePub:
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Diversity of Bifidobacteria within the Infant Gut Microbiota.  Turroni F, Peano C, Pass DA, Foroni E, Severgnini M, Claesson MJ, Kerr C, Hourihane J, Murray D, Fuligni F, Gueimonde M, Margolles A, De Bellis G, O'Toole PW, van Sinderen D, Marchesi JR, Ventura M.  (2012) PLoS One 7(5): e36957.
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Fast skeletal muscle transcriptome of the Gilthead sea bream (Sparus aurata) determined by next generation sequencing.  Garcia de la Serrana Castillo D, Estevez A, Andree K, Johnston IA. (2012) BMC Genomics 13(1): 181.
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Periodontal disease and the oral microbiota in new-onset rheumatoid arthritis.  er JU, Ubeda C, Equinda M, Khanin R, Buischi Y, Viale A, Lipuma L, Attur M, Pillinger MH, Weissmann G, Littman DR, Pamer EG, Bretz WA, Abramson SB.  (2012) Arthritis Rheum ePub:
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Phylotype-level 16S rRNA analysis reveals new bacterial indicators of health state in acute murine colitis.  Berry D, Schwab C, Milinovich G, Reichert J, Ben Mahfoudh K, Decker T, Engel M, Hai B, Hainzl E, Heider S, Kenner L, Müller M, Rauch I, Strobl B, Wagner M, Schleper C, Urich T, Loy A.  (2012) ISME Journal ePub:
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Early life treatment with vancomycin propagates Akkermansia muciniphila and reduces diabetes incidence in the NOD mouse.  Hansen CH, Krych L, Nielsen DS, Vogensen FK, Hansen LH, Sřrensen SJ, Buschard K, Hansen AK.  (2012) Diabetologia ePub:
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Convergent development of anodic bacterial communities in microbial fuel cells.  Yates MD, Kiely PD, Call DF, Rismani-Yazdi H, Bibby K, Peccia J, Regan JM, Logan BE.  (2012) ISME Journal ePub:
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Characterization of Soil Bacterial Assemblies in Brazilian Savanna-Like Vegetation Reveals Acidobacteria Dominance.  Araujo JF, de Castro AP, Costa MM, Togawa RC, Júnior GJ, Quirino BF, Bustamante MM, Williamson L, Handelsman J, Krüger RH.  (2012) Mol Ecol ePub:
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Sequencing and Analysis of the Mediterranean Amphioxus (Branchiostoma lanceolatum) Transcriptome.  Oulion S, Bertrand S, Belgacem MR, Le Petillon Y, Escriva H.  (2012) PLoS One 7(5): e36554.
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Impact of the Resident Microbiota on the Nutritional Phenotype of Drosophila melanogaster.  Ridley EV, Wong AC, Westmiller S, Douglas AE.  (2012) PLoS One 7(5): e36765.
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Pronounced seasonal dynamics of freshwater chitinase genes and chitin processing.  Beier S, Mohit V, Ettema TJ, Ostman O, Tranvik LJ, Bertilsson S.  (2012) Environ Microbiol ePub:
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Gut microbial colonisation in premature neonates predicts neonatal sepsis.  Madan JC, Salari RC, Saxena D, Davidson L, O'Toole GA, Moore JH, Sogin ML, Foster JA, Edwards WH, Palumbo P, Hibberd PL.  (2012) Arch Dis Child Fetal Neonatal Ed ePub:
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Low-Cost Ultra-Wide Genotyping Using Roche/454 Pyrosequencing for Surveillance of HIV Drug Resistance.  Dudley DM, Chin EN, Bimber BN, Sanabani SS, Tarosso LF, Costa PR, Sauer MM, Kallas EG, O 'connor DH.  (2012) PLoS One 7(5): e36494.
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Large-scale transcriptome sequencing and gene analyses in the crab-eating macaque (macaca fascicularis) for biomedical research.  Huh JW, Kim YH, Park SJ, Kim DS, Lee SR, Kim KM, Jeong KJ, Kim JS, Song BS, Sim BW, Kim SU, Kim SH, Chang KT.  (2012) BMC Genomics 13(1): 163.
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Banana-associated microbial communities in Uganda are highly diverse but dominated by Enterobacteriaceae.  Roßmann B, Müller H, Smalla K, Mpiira S, Tumuhairwe JB, Staver C, Berg G.  (2012) Appl Environ Microbiol ePub:
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Diversity of and Selection on Plasmodium falciparum csp T Cell Epitopes Determined by Massively Parallel Pyrosequencing in Lilongwe, Malawi.  ley JA, Mvalo T, Aragam N, Weiser M, Congdon S, Kamwendo D, Martinson F, Hoffman I, Meshnick SR, Juliano JJ.  (2012) J Infectious Diseases ePub:
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Mycangia of Ambrosia Beetles Host Communities of Bacteria.  Hulcr J, Rountree NR, Diamond SE, Stelinski LL, Fierer N, Dunn RR.  (2012) Microb Ecol ePub:
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Reliable detection of subclonal single-nucleotide variants in tumour cell populations.  Gerstung M, Beisel C, Rechsteiner M, Wild P, Schraml P, Moch H, Beerenwinkel N.  (2012) Nature Communications 3: 811.
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Pyrosequencing reveals bacteria carried in different wind-eroded sediments.  Gardner T, Acosta-Martinez V, Calderón FJ, Zobeck TM, Baddock M, Van Pelt RS, Senwo Z, Dowd S, Cox S.  (2012) J Eviron Qual 41(3): 744-53.
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Next Generation Sequencing to Detect Variation in the Plasmodium falciparum Circumsporozoite Protein.  Gandhi K, Thera MA, Coulibaly D, Traoré K, Guindo AB, Doumbo OK, Takala-Harrison S, Plowe CV. (2012) Am J Trop Med Hyg 86(5): 775-81.
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Evidence of a robust resident bacteriophage population revealed through analysis of the human salivary virome.  Pride DT, Salzman J, Haynes M, Rohwer F, Davis-Long C, White RA 3rd, Loomer P, Armitage GC, Relman DA.  (2012) ISME Journal 6(5): 915-26.
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Investigation of postpartum dairy cows' uterine microbial diversity using metagenomic pyrosequencing of the 16S rRNA gene.  Machado VS, Oikonomou G, Bicalho ML, Knauer WA, Gilbert R, Bicalho RC.  (2012) Vet Microbiol ePub:
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Midgut Microbiota of the Malaria Mosquito Vector Anopheles gambiae and Interactions with Plasmodium falciparum Infection.  Boissičre A, Tchioffo MT, Bachar D, Abate L, Marie A, Nsango SE, Shahbazkia HR, Awono-Ambene PH, Levashina EA, Christen R, Morlais I.  (2012) PLos Pathogens 8(5): e1002742.
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Molecular markers reveal infestation dynamics of the bed bug (Hemiptera: Cimicidae) within apartment buildings.  Booth W, Saenz VL, Santangelo RG, Wang C, Schal C, Vargo EL.  (2012) J Med Entomol 49(3): 535-46.
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Tissue-specific Temporal Exome Capture Revealed Muscle-specific Genes and SNPs in Indian Buffalo (Bubalus bubalis).  Jakhesara SJ, Ahir VB, Padiya KB, Koringa PG, Rank DN, Joshi CG.  (2012) Genomics Proteomics Bioinformatics 10(2): 107-13.
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Pyrosequencing the Bemisia tabaci Transcriptome Reveals a Highly Diverse Bacterial Community and a Robust System for Insecticide Resistance.  Xie W, Meng QS, Wu QJ, Wang SL, Yang X, Yang NN, Li RM, Jiao XG, Pan HP, Liu BM, Su Q, Xu BY, Hu SN, Zhou XG, Zhang YJ.  (2012) PLoS One 7(4): e35181.
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Reference-free transcriptome assembly in non-model animals from next-generation sequencing data.  Cahais V, Gayral P, Tsagkogeorga G, Melo-Ferreira J, Ballenghien M, Weinert L, Chiari Y, Belkhir K, Ranwez V, Galtier N.  (2012) Mol Ecol Resour ePub:
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Fatty Acid Composition of Developing Sea Buckthorn (Hippophae rhamnoides L.) Berry and the Transcriptome of the Mature Seed.  Fatima T, Snyder CL, Schroeder WR, Cram D, Datla R, Wishart D, Weselake RJ, Krishna P.  (2012) PLoS One 7(4): e34099.
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Antibody Repertoires in Humanized NOD-scid-IL2Ră(null) Mice and Human B Cells Reveals Human-Like Diversification and Tolerance Checkpoints in the Mouse.  Ippolito GC, Hoi KH, Reddy ST, Carroll SM, Ge X, Rogosch T, Zemlin M, Shultz LD, Ellington AD, Vandenberg CL, Georgiou G.  (2012) PLoS One 7(4): e35497.
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The airway microbiota in cystic fibrosis: a complex fungal and bacterial community-implications for therapeutic management.  Delhaes L, Monchy S, Fréalle E, Hubans C, Salleron J, Leroy S, Prevotat A, Wallet F, Wallaert B, Dei-Cas E, Sime-Ngando T, Chabé M, Viscogliosi E.  (2012) PLoS One 7(4): e36313.
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Sequence and Analysis of the Genome of the Pathogenic Yeast Candida orthopsilosis.  Riccombeni A, Vidanes G, Proux-Wéra E, Wolfe KH, Butler G.  (2012) PLoS One 7(4): e35750.
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Microsatellite development for the relictual conifer Araucaria araucana (Araucariaceae) using next-generation sequencing.  Martín MA, Mattioni C, Lusini I, Drake F, Cherubini M, Herrera MA, Villani F, Martín LM.  (2012) Am J Botany ePub:
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Leaf microbiota in an agroecosystem: spatiotemporal variation in bacterial community composition on field-grown lettuce.  Rastogi G, Sbodio A, Tech JJ, Suslow TV, Coaker GL, Leveau JH.  (2012) ISME Journal ePub:
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Functional metagenomics reveals novel salt tolerance loci from the human gut microbiome.  Culligan EP, Sleator RD, Marchesi JR, Hill C.  (2012) ISME Journal ePub:
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Diversity patterns and activity of uncultured marine heterotrophic flagellates unveiled with pyrosequencing.  Logares R, Audic S, Santini S, Pernice MC, de Vargas C, Massana R.  (2012) ISME Journal ePub:
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The Physalis peruviana leaf transcriptome: assembly, annotation and gene model prediction.  Garzón-Martínez GA, Zhu I, Landsman D, Barrero LS, Marino-Ramirez L. (2012) BMC Genomics 13(1): 151.
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Integration of deep transcript and targeted metabolite profiles for eight cultivars of opium poppy.  Desgagné-Penix I, Farrow SC, Cram D, Nowak J, Facchini PJ.  (2012) Plant Mol Biol ePub:
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Loss of sex and age driven differences in the gut microbiome characterize arthritis-susceptible *0401 mice but not arthritis-resistant *0402 mice.  Gomez A, Luckey D, Yeoman CJ, Marietta EV, Berg Miller ME, Murray JA, White BA, Taneja V.  (2012) PLoS One 7(4): e36095.
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Complete genome sequence, lifestyle, and multi-drug resistance of the human pathogen Corynebacterium resistens DSM 45100 isolated from blood samples of a leukemia patient.  Schroder J, Maus I, Meyer K, Wordemann S, Blom J, Jaenicke S, Schneider J, Trost E, Tauch A.  (2012) BMC Genomics 13(1): 141.
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Performance comparison of benchtop high-throughput sequencing platforms.  Loman NJ, Misra RV, Dallman TJ, Constantinidou C, Gharbia SE, Wain J, Pallen MJ.  (2012) Nature Biotechnology ePub:
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Shifts in identity and activity of methanotrophs in arctic lake sediments in response to temperature changes.  He R, Wooller MJ, Pohlman JW, Quensen J, Tiedje JM, Leigh MB.  (2012) Appl Environ Microbiol ePub:
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Comprehensive Assessment of Potential Multiple Myeloma Immunoglobulin Heavy Chain V-D-J Intraclonal Variation Using Massively Parallel Pyrosequencing.  Tschumper RC, Asmann YW, Hossain A, Huddleston PM, Wu X, Dispenzieri A, Eckloff BW, Jelinek1 DF.  (2012) Oncotarget ePub:
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Unravelling soil fungal communities from different mediterranean land-use backgrounds.  Orgiazzi A, Lumini E, Nilsson RH, Girlanda M, Vizzini A, Bonfante P, Bianciotto V.  (2012) PLoS One 7(4): e34847.
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Transcriptomics of In Vitro Immune-Stimulated Hemocytes from the Manila Clam Ruditapes philippinarum Using High-Throughput Sequencing.  Moreira R, Balseiro P, Planas JV, Fuste B, Beltran S, Novoa B, Figueras A.  (2012) PLoS One 7(4): e35009.
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Exploring the Transcriptome of Atlantic Salmon (Salmo salar) Skin, a Major Defense Organ.  Micallef G, Bickerdike R, Reiff C, Fernandes JM, Bowman AS, Martin SA.  (2012) Mar Biotechnol (NY) ePub:
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Symbiodinium transcriptomes: genome insights into the dinoflagellate symbionts of reef-building corals.  Bayer T, Aranda M, Sunagawa S, Yum LK, Desalvo MK, Lindquist E, Coffroth MA, Voolstra CR, Medina M.  (2012) PLoS One 7(4): e35269.
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Limited genetic diversity preceded extinction of the tasmanian tiger.  Menzies BR, Renfree MB, Heider T, Mayer F, Hildebrandt TB, Pask AJ.  (2012) PLoS One 7(4): e35433.
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Characterization of squamate olfactory receptor genes and their transcripts by the high-throughput sequencing approach.  Dehara Y, Hashiguchi Y, Matsubara K, Yanai T, Kubo M, Kumazawa Y.  (2012) Genome Biol Evol ePub:
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MHC diversity, malaria and lifetime reproductive success in collared flycatchers.  Radwan J, Zagalska-Neubauer M, Cichoń M, Sendecka J, Kulma K, Gustafsson L, Babik W. (2012) Mol Ecol ePub:
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A transcriptome map of perennial ryegrass (Lolium perenne L.).  Studer B, Byrne S, Nielsen RO, Panitz F, Bendixen C, Islam MS, Pfeifer M, Lubberstedt T, Asp T.  (2012) BMC Genomics 13(1): 140.
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Complete sequencing of an IncH plasmid carrying the blaNDM-1, blaCTX-M-15 and qnrB1 genes.  Villa L, Poirel L, Nordmann P, Carta C, Carattoli A.  (2012) J Antimicrob Chemother ePub:
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Telmatocola sphagniphila gen. nov., sp. nov., a Novel Dendriform Planctomycete from Northern Wetlands.  Kulichevskaya IS, Serkebaeva YM, Kim Y, Rijpstra WI, Damsté JS, Liesack W, Dedysh SN.  (2012) Front Microbiol 3: 146.
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A second generation framework for the analysis of microsatellites in expressed sequence tags and the development of EST-SSR markers for a conifer, Cryptomeria japonica.  Ueno S, Moriguchi Y, Uchiyama K, Ujino-Ihara T, Futamura N, Sakurai T, Shinohara K, Tsumura Y.  (2012) BMC Genomics 13(1): 136.
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Characterization of common carp transcriptome: sequencing, de novo assembly, annotation and comparative genomics.  Ji P, Liu G, Xu J, Wang X, Li J, Zhao Z, Zhang X, Zhang Y, Xu P, Sun X.  (2012) PLoS One 7(4): e35152.
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Diversity and partitioning of bacterial populations within the accessory nidamental gland of the squid Euprymna scolopes.  Collins AJ, Labarre BA, Wong Won BS, Shah MV, Heng S, Choudhury MH, Haydar SA, Santiago J, Nyholm SV.  (2012) Appl Environ Microbiol ePub:
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A tailed PCR procedure for cost-effective, two-order multiplex sequencing of candidate genes in polyploid plants.  Gholami M, Bekele WA, Schondelmaier J, Snowdon RJ.  (2012) Plant Biotechnol J ePub:
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Transcriptome analysis of enriched Golovinomyces orontii haustoria by deep 454 pyrosequencing.  Weßling R, Schmidt SM, Micali CO, Knaust F, Reinhardt R, Neumann U, van Themaat EV, Panstruga R.  (2012) Fungal Genet Biol ePub:
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Search for an aetiological virus candidate in chronic lymphocytic leukaemia by extensive transcriptome analysis.  Rego N, Bianchi S, Moreno P, Persson H, Kvist A, Pena A, Oppezzo P, Naya H, Rovira C, Dighiero G, Pritsch O.  (2012) Br J Haematol ePub:
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B-RAF Mutant Alleles Associated with Langerhans Cell Histiocytosis, a Granulomatous Pediatric Disease.  Satoh T, Smith A, Sarde A, Lu HC, Mian S, Trouillet C, Mufti G, Emile JF, Fraternali F, Donadieu J, Geissmann F.  (2012) PLoS One 7(4): e33891.
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Dissemination of a pSCFS3-like cfr-carrying plasmid in Staphylococcus aureus and Staphylococcus epidermidis Clinical Isolates Recovered from Hospitals in Ohio.  Mendes RE, Deshpande LM, Bonilla HF, Schwarz S, Huband MD, Jones RN, Quinn JP.  (2012) Antimicrob Agents Chemother ePub:
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Construction of a Metagenomic Library for the Marine Sponge Halichondria okadai.  Abe T, Sahin FP, Akiyama K, Naito T, Kishigami M, Miyamoto K, Sakakibara Y, Uemura D.  (2012) Biosci Biotechnol Biochem ePub:
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Transcriptome and full-length cDNA resources for the mountain pine beetle, Dendroctonus ponderosae Hopkins, a major insect pest of pine forests.  Keeling CI, Henderson H, Li M, Yuen M, Clark EL, Fraser JD, Huber DP, Liao NY, Roderick Docking T, Birol I, Chan SK, Taylor GA, Palmquist D, Jones SJ, Bohlmann J.  (2012) Insect Biochem Mol Biol ePub:
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Next generation sequencing fails to identify human virus sequences in cutaneous squamous cell carcinoma.  Ganzenmueller T, Yakushko Y, Kluba J, Henke-Gendo C, Gutzmer R, Schulz TF.  (2012) Int J Cancer ePub:
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Particle-size distributions and seasonal diversity of allergenic and pathogenic fungi in outdoor air.  Yamamoto N, Bibby K, Qian J, Hospodsky D, Rismani-Yazdi H, Nazaroff WW, Peccia J.  (2012) ISME Journal ePub:
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Contrasting effects of Bifidobacterium breve NCIMB 702258 and Bifidobacterium breve DPC 6330 on the composition of murine brain fatty acids and gut microbiota.  Wall R, Marques TM, O'Sullivan O, Ross RP, Shanahan F, Quigley EM, Dinan TG, Kiely B, Fitzgerald GF, Cotter PD, Fouhy F, Stanton C.  (2012) Am J Clin Nutr ePub:
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Transcriptome analysis of Termitomyces albuminosus reveals the biodegradation of lignocellulose.  Yang F, Xu B, Li J, Huang Z. (2012) Wei Sheng Wu Xue Bao 52(4): 466-77.
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Generation and analysis of blueberry transcriptome sequences from leaves, developing fruit, and flower buds from cold acclimation through deacclimation.  Rowland LJ, Alkharouf N, Darwish O, Ogden EL, Polashock JJ, Bassil NV, Main D.  (2012) BMC Plant Biol 12(1): 46.
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Characterization of the chloroplast genome sequence of oil palm (Elaeis guineensis Jacq.).  Uthaipaisanwong P, Chanprasert J, Shearman JR, Sangsrakru D, Yoocha T, Jomchai N, Jantasuriyarat C, Tragoonrung S, Tangphatsornruang S.  (2012) Gene ePub:
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Multi-locus HLA class I and II allele and haplotype associations with follicular lymphoma.  Skibola CF, Akers NK, Conde L, Ladner M, Hawbecker SK, Cohen F, Ribas F, Erlich HA, Goodridge D, Trachtenberg EA, Smith MT, Bracci PM.  (2012) Tissue Antigens 79(4): 279-86.
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Escape from CD8+ T Cell Responses in Mamu-B*00801+ Macaques Differentiates Progressors from Elite Controllers.  Mudd PA, Ericsen AJ, Burwitz BJ, Wilson NA, O'Connor DH, Hughes AL, Watkins DI.  (2012) J Immunology 188(7): 3364-70.
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Life at the wedge: the activity and diversity of arctic ice wedge microbial communities.  Wilhelm RC, Radtke KJ, Mykytczuk NC, Greer CW, Whyte LG.  (2012) Astrobiology 12(4): 347-60.
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Random amplification and pyrosequencing for identification of novel viral genome sequences.  Hang J, Forshey BM, Kochel TJ, Li T, Solórzano VF, Halsey ES, Kuschner RA.  (2012) J Biomol Tech 23(1):: 4-10.
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Genome Sequence of Lactobacillus fructivorans KCTC 3543.  Nam SH, Choi SH, Kang A, Lee KS, Kim DW, Kim RN, Kim DS, Park HS.  (2012) J Bacteriology 194(8): 2111-2.
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Soil sampling and isolation of extracellular DNA from large amount of starting material suitable for metabarcoding studies.  Taberlet P, Prud'homme SM, Campione E, Roy J, Miquel C, Shehzad W, Gielly L, Rioux D, Choler P, Clément JC, Melodelima C, Pompanon F, Coissac E. (2012) Mol Ecol 21(8): 1816-20.
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Assessment of the microbial diversity of Brazilian kefir grains by PCR-DGGE and pyrosequencing analysis.  Leite AM, Mayo B, Rachid CT, Peixoto RS, Silva JT, Paschoalin VM, Delgado S.  (2012) Food Microbiol 31(2): 215-21.
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Changes in the root-associated fungal communities along a primary succession gradient analysed by 454 pyrosequencing.  Blaalid R, Carlsen T, Kumar S, Halvorsen R, Ugland KI, Fontana G, Kauserud H.  (2012) Mol Ecol 21(8): 1897-908.
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Transcriptome sequencing of black grouse (Tetrao tetrix) for immune gene discovery and microsatellite development.  Wang B, Ekblom R, Castoe TA, Jones EP, Kozma R, Bongcam-Rudloff E, Pollock DD, Höglund J.  (2012) Open Biol 2(4): 120054.
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Exploring the switchgrass transcriptome using second-generation sequencing technology.  Wang Y, Zeng X, Iyer NJ, Bryant DW, Mockler TC, Mahalingam R.  (2012) PLoS One 7(3): e34225.
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The transcriptome and proteome are altered in marine polychaetes (Annelida) exposed to elevated metal levels.  Neave MJ, Streten-Joyce C, Nouwens AS, Glasby CJ, McGuinness KA, Parry DL, Gibb KS.  (2012) J Proteomics ePub:
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Characterization of rainbow trout gonad, brain and gill deep cDNA repertoires using a Roche 454-Titanium sequencing approach.  Le Cam A, Bobe J, Bouchez O, Cabeau C, Kah O, Klopp C, Lareyre JJ, Le Guen I, Lluch J, Montfort J, Moreews F, Nicol B, Prunet P, Rescan PY, Servili A, Guiguen Y.  (2012) Gene ePub:
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Spatial and temporal dynamics of the microbial community in the Hanford unconfined aquifer.  Lin X, McKinley J, Resch CT, Kaluzny R, Lauber CL, Fredrickson J, Knight R, Konopka A.  (2012) ISME Journal ePub:
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Molecular characterization, immune responses and DNA protection activity of rock bream (Oplegnathus fasciatus), peroxiredoxin 6 (Prx6).  De Zoysa M, Ryu JH, Chung HC, Kim CH, Nikapitiya C, Oh C, Kim H, Saranaya Revathy K, Whang I, Lee J.  (2012) Fish Shellfish Immunol ePub:
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Epidemic history of hepatitis C virus infection in two remote communities in Nigeria, West Africa.  Forbi JC, Purdy MA, Campo DS, Vaughan G, Dimitrova ZE, Ganova-Raeva LM, Xia GL, Khudyakov YE.  (2012) J Gen Virology ePub:
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Improved Detection of Bifidobacteria with Optimised 16S rRNA-Gene Based Pyrosequencing.  Sim K, Cox MJ, Wopereis H, Martin R, Knol J, Li MS, Cookson WO, Moffatt MF, Kroll JS. (2012) PLoS One 7(3): e32543.
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Deep sequencing reveals minor protease resistance mutants in patients failing a protease inhibitor regimen.  Fisher R, van Zyl GU, Travers SA, Kosakovsky Pond SL, Engelbrech S, Murrell B, Scheffler K, Smith D.  (2012) J Virology ePub:
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Decade-long bacterial community dynamics in cystic fibrosis airways.  Zhao J, Schloss PD, Kalikin LM, Carmody LA, Foster BK, Petrosino JF, Cavalcoli JD, Vandevanter DR, Murray S, Li JZ, Young VB, Lipuma JJ.  (2012) PNAS ePub:
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A proteomics approach for the identification and cloning of monoclonal antibodies from serum.  Cheung WC, Beausoleil SA, Zhang X, Sato S, Schieferl SM, Wieler JS, Beaudet JG, Ramenani RK, Popova L, Comb MJ, Rush J, Polakiewicz RD.  (2012) Nature Biotechnology ePub:
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Commensal bacteria-derived signals regulate basophil hematopoiesis and allergic inflammation.  Hill DA, Siracusa MC, Abt MC, Kim BS, Kobuley D, Kubo M, Kambayashi T, Larosa DF, Renner ED, Orange JS, Bushman FD, Artis D.  (2012) Nature Medicine 18(4): 538-46.
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Increased gut permeability and microbiota change associate with mesenteric fat inflammation and metabolic dysfunction in diet-induced obese mice.  Lam YY, Ha CW, Campbell CR, Mitchell AJ, Dinudom A, Oscarsson J, Cook DI, Hunt NH, Caterson ID, Holmes AJ, Storlien LH.  (2012) PLoS One 7(3): e34233.
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Phylogenetic Position of a Copper Age Sheep (Ovis aries) Mitochondrial DNA.  Olivieri C, Ermini L, Rizzi E, Corti G, Luciani S, Marota I, De Bellis G, Rollo F.  (2012) PLoS One 7(3): e33792.
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Carbon, metals, and grain size correlate with bacterial community structure in sediments of a high arsenic aquifer.  Legg TM, Zheng Y, Simone B, Radloff KA, Mladenov N, González A, Knights D, Siu HC, Rahman MM, Ahmed KM, McKnight DM, Nemergut DR.  (2012) Front Microbiol 3: 82.
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Occurrence and impact of the root-rot biocontrol agent Phlebiopsis gigantea on soil fungal communities in Picea abies forests of northern Europe.  Menkis A, Burokienë D, Gaitnieks T, Uotila A, Johannesson H, Rosling A, Finlay RD, Stenlid J, Vasaitis R. (2012) FEMS Microbiol Ecol ePub:
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Massively Parallel RNA Sequencing Identifies a Complex Immune Gene Repertoire in the lophotrochozoan Mytilus edulis.  Philipp EE, Kraemer L, Melzner F, Poustka AJ, Thieme S, Findeisen U, Schreiber S, Rosenstiel P.  (2012) PLoS One 7(3): e33091.
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Transcriptome sequencing of field pea and faba bean for discovery and validation of SSR genetic markers.  Kaur S, Pembleton L, Cogan N, Savin K, Leonforte T, Paull J, Materne M, Forster J.  (2012) BMC Genomics 3(1): 104.
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Long-term monitoring drug resistance by ultra-deep pyrosequencing in a chronic hepatitis B virus (HBV)-infected patient exposed to several unsuccessful therapy schemes.  Sede M, Ojeda D, Cassino L, Westergaard G, Vazquez M, Benetti S, Fay F, Tanno H, Quarleri J.  (2012) Antiviral Research ePub:
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Monitoring bacterial community structure and variability in time scale in full-scale anaerobic digesters.  Lee SH, Kang HJ, Lee YH, Lee TJ, Han K, Choi Y, Park HD.  (2012) J Environ Monit ePub:
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Chestnut resistance to the blight disease: insights from transcriptome analysis.  Barakat A, Staton M, Cheng CH, Park J, Yassin NB, Ficklin S, Yeh CC, Hebard F, Baier K, Powell W, Schuster SC, Wheeler N, Abbott A, Carlson JE, Sederoff R.  (2012) BMC Plant Biol 12(1): 38.
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Genome wide expression profiling of two accession of G. herbaceum L. in response to drought.  Ranjan A, Nigam D, Asif M, Singh R, Ranjan S, Mantri S, Pandey N, Trivedi I, Rai KM, Jena SN, Koul BN, Tuli R, Pathre UV, Sawant SV. (2012) BMC Genomics 13(1): 94.
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Tracking nickel-adaptive biomarkers in Pisolithus albus from New Caledonia using a transcriptomic approach.  Majorel C, Hannibal L, Soupe ME, Carriconde F, Ducousso M, Lebrun M, Jourand P. (2012) Mol Ecol ePub:
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Quantitative FISH analysis of microbial consortia from a biogenic gas field in the Cook Inlet Basin, Alaska.  Dawson KS, Strapoc D, Huizinga B, Lidstrom U, Ashby M, Macalady JL.  (2012) Appl Environ Microbiol ePub:
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Early life antibiotic-driven changes in microbiota enhance susceptibility to allergic asthma.  Russell SL, Gold MJ, Hartmann M, Willing BP, Thorson L, Wlodarska M, Gill N, Blanchet MR, Mohn WW, McNagny KM, Finlay BB. (2012) EMBO Rep ePub:
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Detection of Genomic Variations in BRCA1 and BRCA2 Genes by Long-Range PCR and Next-Generation Sequencing.  Hernan I, Borrŕs E, de Sousa Dias M, Gamundi MJ, Mańé B, Llort G, Agúndez JA, Blanca M, Carballo M.  (2012) J Mol Diagn ePub:
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Distinct and diverse anaerobic bacterial communities in boreal lakes dominated by candidate division OD1.  Peura S, Eiler A, Bertilsson S, Nykänen H, Tiirola M, Jones RI.  (2012) ISME Journal ePub:
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Detection of diverse aquatic microbes in blood and organs of drowning victims: First metagenomic approach using high-throughput 454-pyrosequencing.  Kakizaki E, Ogura Y, Kozawa S, Nishida S, Uchiyama T, Hayashi T, Yukawa N.  (2012) Forensic Sci Int ePub:
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Monitoring airborne biotic contaminants in the indoor environment of pig and poultry confinement buildings.  Hong PY, Li X, Yang X, Shinkai T, Zhang Y, Wang X, Mackie RI. (2012) Eviron Microbiol ePub:
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Dynamics of Envelope Evolution in Clade C SHIV-Infected Pig-Tailed Macaques during Disease Progression Analyzed by Ultra-Deep Pyrosequencing.  Tso FY, Tully DC, Gonzalez S, Quince C, Ho O, Polacino P, Ruprecht RM, Hu SL, Wood C.  (2012) PLoS One 7(3):: e32827.
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Transposable Elements Are a Major Cause of Somatic Polymorphism in Vitis vinifera L.  Carrier G, Le Cunff L, Dereeper A, Legrand D, Sabot F, Bouchez O, Audeguin L, Boursiquot JM, This P.  (2012) PLoS One (3): e32973.
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Transcriptome Sequencing and Characterization for the Sea Cucumber Apostichopus japonicus (Selenka, 1867).  Du H, Bao Z, Hou R, Wang S, Su H, Yan J, Tian M, Li Y, Wei W, Lu W, Hu X, Wang S, Hu J. (2012) PLoS One 7(3): e33311.
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Bayesian estimation of bacterial community composition from 454 sequencing data.  Cheng L, Walker AW, Corander J.  (2012) Nucleic Acids Research ePub:
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Integrated metagenomic and metaproteomic analyses of an ANME-1-dominated community in marine cold seep sediments.  Stokke R, Roalkvam I, Lanzen A, Haflidason H, Steen IH.  (2012) Environ Microbiol ePub:
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Impact of enhanced Staphylococcus DNA extraction on microbial community measures in cystic fibrosis sputum.  Zhao J, Carmody LA, Kalikin LM, Li J, Petrosino JF, Schloss PD, Young VB, Lipuma JJ. (2012) PLoS One 7(3): e33127.
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Low-frequency nevirapine resistance at multiple sites may predict treatment failure in infants on nevirapine-based treatment.  Lehman DA, Wanalwa DC, McCoy CO, Matsen FA, Langat A, Chohan BH, Benki-Nugent S, Custers-Allen R, Bushman FD, John-Stewart GC, Overbaugh J. (2012) J Acquir Immune Defic Syndr ePub:
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Complete Genome Sequence of Mycoplasma pneumoniae Type 2a Strain 309, Isolated in Japan.  Kenri T, Horino A, Matsui M, Sasaki Y, Suzuki S, Narita M, Ohya H, Okazaki N, Shibayama K.  (2012) J Bacteriology 194(5): 1253-4.
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Complete Genome Sequence of Staphylococcus aureus M013, a pvl-Positive, ST59-SCCmec Type V Strain Isolated in Taiwan.  Huang TW, Chen FJ, Miu WC, Liao TL, Lin AC, Huang IW, Wu KM, Tsai SF, Chen YT, Lauderdale TL. (2012) J Bacteriology 194(5): 1256-7.
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Cosmopolitanism of microbial eukaryotes in the global deep seas.  Creer S, Sinniger F. (2012) Mol Ecol 21(5): 1033-5
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Draft Genome Sequence of Marinobacterium stanieri S30, a Strain Isolated from a Coastal Lagoon in Chuuk State in Micronesia.  Choi YU, Kwon YK, Ye BR, Hyun JH, Heo SJ, Affan A, Yoon KT, Park HS, Oh C, Kang DH.  (2012) J Bacteriology 194(5): 1260.
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Experimental Analysis of Sources of Error in Evolutionary Studies Based on Roche/454 Pyrosequencing of Viral Genomes.  Becker EA, Burns CM, León EJ, Rajabojan S, Friedman R, Friedrich TC, O'Connor SL, Hughes AL. (2012) Genome Biol Evol ePub:
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MDM2 Inhibitor Nutlin-3a Induces Apoptosis and Senescence in Cutaneous T-Cell Lymphoma: Role of p53.  Manfé V, Biskup E, Johansen P, Kamstrup MR, Krejsgaard TF, Morling N, Wulf HC, Gniadecki R. (2012) J Invest Dermatol ePub:
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An ovary transcriptome for all maturational stages of the striped bass (Morone saxatilis), a highly advanced perciform fish.  Reading BJ, Chapman RW, Schaff JE, Scholl EH, Opperman CH, Sullivan CV.  (2012) BMC Res Notes 5(1): 111.
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Characterization of a novel porcine enterovirus in wild boars in Hungary.  Boros A, Nemes C, Pankovics P, Bíró H, Kapusinszky B, Delwart E, Reuter G.  (2012) Arch Virology ePub:
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Bifunctional cis-abienol synthase from Abies balsamea discovered by transcriptome sequencing and its implications for diterpenoid fragrance production.  Zerbe P, Chiang A, Yuen M, Hamberger B, Hamberger B, Draper JA, Britton R, Bohlmann J.  (2012) J Biol Chem ePub:
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A Comparison of rpoB and 16S rRNA as Markers in Pyrosequencing Studies of Bacterial Diversity.  Vos M, Quince C, Pijl AS, de Hollander M, Kowalchuk GA.  (2012) PLoS One 7(2): e30600.
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Virologic failures on initial boosted-PI regimen infrequently possess low-level variants with major PI resistance mutations by ultra-deep sequencing.  Lataillade M, Chiarella J, Yang R, DeGrosky M, Uy J, Seekins D, Simen B, St John E, Moreno E, Kozal M.  (2012) PLoS One 7(2): e30118.
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Multisite Analytic Performance Studies of a Real-Time Polymerase Chain Reaction Assay for the Detection of BRAF V600E Mutations in Formalin-Fixed Paraffin-Embedded Tissue Specimens of Malignant Melanoma.  Anderson S, Bloom KJ, Vallera DU, Rueschoff J, Meldrum C, Schilling R, Kovach B, Lee JR, Ochoa P, Langland R, Halait H, Lawrence HJ, Dugan MC. (2012) Arch Pathol Lab Med ePub:
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Cxcr2 and Cxcl5 regulate the IL-17/G-CSF axis and neutrophil homeostasis in mice.  Mei J, Liu Y, Dai N, Hoffmann C, Hudock KM, Zhang P, Guttentag SH, Kolls JK, Oliver PM, Bushman FD, Worthen GS.  (2012) J Clin Invest ePub:
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Effect of the proton-pump inhibitor omeprazole on the gastrointestinal bacterial microbiota of healthy dogs.  Garcia-Mazcorro JF, Suchodolski JS, Jones KR, Clark-Price SC, Dowd SE, Minamoto Y, Markel M, Steiner JM, Dossin O, Marchesi J.  (2012) FEMS Microbiol Ecol ePub:
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Methanogenic biodegradation of two-ringed polycyclic aromatic hydrocarbons.  Berdugo-Clavijo C, Dong X, Soh J, Sensen CW, Gieg LM.  (2012) FEMS Microbiol Ecol ePub:
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High efficiency recombineering in lactic acid bacteria.  van Pijkeren JP, Britton RA. (2012) Nucleic Acids Research ePub:
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How plants sense wounds: damaged-self recognition is based on plant-derived elicitors and induces octadecanoid signaling.  Heil M, Ibarra-Laclette E, Adame-Álvarez RM, Martínez O, Ramirez-Chávez E, Molina-Torres J, Herrera-Estrella L.  (2012) PLoS One 7(2): e30537.
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Bacterial translocation and changes in the intestinal microbiome in mouse models of liver disease.  uts DE, Torralba M, Nelson KE, Brenner DA, Schnabl B. (2012) J Hepatology ePub:
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Global distribution and diversity of marine Verrucomicrobia.  Freitas S, Hatosy S, Fuhrman JA, Huse SM, Mark Welch DB, Sogin ML, Martiny AC.  (2012) ISME Journal ePub:
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The Drosophila melanogaster Genetic Reference Panel.  Mackay TF et al. (2012) Nature 482(7384): 173-8.
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Rapid microbial response to the presence of an ancient relic in the Antarctic Dry Valleys.  Tiao G, Lee CK, McDonald IR, Cowan DA, Cary SC.  (2012) Nature Communications 3: 660.
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Defining the "core microbiome" of the microbial communities in the tonsils of healthy pigs.  Lowe BA, Marsh TL, Isaacs-Cosgrove N, Kirkwood RN, Kiupel M, Mulks MH.  (2012) BMC Microbiol 12(1): 20.
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CAPRG: Sequence Assembling Pipeline for Next Generation Sequencing of Non-Model Organisms.  Rawat A, Elasri MO, Gust KA, George G, Pham D, Scanlan LD, Vulpe C, Perkins EJ. (2012) PLoS One 7(2): e30370.
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Profiling the metatranscriptome of the protistan community in Coptotermes formosanus with emphasis on the lignocellulolytic system.  Xie L, Zhang L, Zhong Y, Liu N, Long Y, Wang S, Zhou X, Zhou Z, Huang Y, Wang Q.  (2012) Genomics ePub:
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Elevated carbon dioxide alters the structure of soil microbial communities.  Deng Y, He Z, Xu M, Qin Y, Van Nostrand JD, Wu L, Roe BA, Wiley G, Hobbie SE, Reich PB, Zhou J. (2012) Appl Environ Microbiol ePub:
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The equine stomach harbors an abundant and diverse mucosal microbiota.  Perkins GA, den Bakker HC, Burton AJ, Erb HN, McDonough SP, McDonough PL, Parker J, Rosenthal RL, Wiedmann M, Dowd SE, Simpson KW. (2012) Appl Environ Microbiol ePub:
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Structure, fluctuation and magnitude of a natural grassland soil metagenome.  Delmont TO, Prestat E, Keegan KP, Faubladier M, Robe P, Clark IM, Pelletier E, Hirsch PR, Meyer F, Gilbert JA, Le Paslier D, Simonet P, Vogel TM.  (2012) ISME Journal ePub:
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Soil sampling and isolation of extracellular DNA from large amount of starting material suitable for metabarcoding studies.  Taberlet P, Prud'homme SM, Campione E, Roy J, Miquel C, Shehzad W, Gielly L, Rioux D, Choler P, Clément JC, Melodelima C, Pompanon F, Coissac E.  (2012) Mol Ecol ePub:
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Active and total microbial communities in forest soil are largely different and highly stratified during decomposition.  Petr Baldrian, Miroslav Kolarik, Martina Stursova, Jan Kopecky, Vendula Valaskova, Tomas Vetrovsky, Lucia Zifcakova, Jaroslav Snajdr, Jakub Ridl, Cestmir Vlcek and Jana Voriskova (2012) ISME Journal 6(2): 248-58.
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Effector identification in the lettuce downy mildew Bremia lactucae by massively parallel transcriptome sequencing.  Stassen JH, Seidl MF, Vergeer PW, Nijman IJ, Snel B, Cuppen E, VAN DEN Ackerveken G.  (2012) Mol Plant Pathol ePub:
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Highly Pathogenic Avian Influenza Virus Subtype H5N1 Escaping Neutralization: More than HA Variation.  Höper D, Kalthoff D, Hoffmann B, Beer M.  (2012) J Virology 86(3): 1394-404.
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The Transcriptome Analysis of Strongyloides stercoralis L3i Larvae Reveals Targets for Intervention in a Neglected Disease.  Marcilla A, Garg G, Bernal D, Ranganathan S, Forment J, Ortiz J, Muńoz-Antolí C, Dominguez MV, Pedrola L, Martinez-Blanch J, Sotillo J, Trelis M, Toledo R, Esteban JG.  (2012) PLoS Negl Trop Dis 6(2):: e1513.
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Genome sequence of Wickerhamomyces anomalus DSM 6766 reveals genetic basis of biotechnologically important antimicrobial activities.  Schneider J, Rupp O, Trost E, Jaenicke S, Passoth V, Goesmann A, Tauch A, Brinkrolf K.  (2012) FEMS Yeast Research ePub:
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A cost-effective and universal strategy for complete prokaryotic genomic sequencing proposed by computer simulation.  Jiang J, Li J, Kwan HS, Au CH, Law PT, Li L, Kam KM, Ling JM, Leung FC.  (2012) BMC Res Notes 5(1): 80.
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Inflamed target tissue provides a specific niche for highly expanded T-cell clones in early human autoimmune disease.  Klarenbeek PL, de Hair MJ, Doorenspleet ME, van Schaik BD, Esveldt RE, van de Sande MG, Cantaert T, Gerlag DM, Baeten D, van Kampen AH, Baas F, Tak PP, de Vries N.  (2012) Ann Rheum Dis ePub:
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Complete Sequence of a Novel 178 kb Plasmid Carrying blaNDM-1 in a Providencia stuartii Strain Isolated in Afghanistan.  Mc Gann P, Hang J, Clifford RJ, Yang Y, Kwak YI, Kuschner RA, Lesho EP, Waterman PE.  (2012) Antimicrob Agents Chemother ePub:
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Whole Genome Profiling provides a robust framework for physical mapping and sequencing in the highly complex and repetitive wheat genome.  Philippe R, Choulet F, Paux E, van Oeveren J, Tang J, Wittenberg AH, Janssen A, van Eijk MJ, Stormo K, Alberti A, Wincker P, Akhunov E, van der Vossen E, Feuillet C.  (2012) BMC Genomics 13(1): 47.
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Ecological Succession of Bacterial Communities During Conventionalization of Germ-Free Mice.  Gillilland MG 3rd, Erb-Downward JR, Bassis CM, Shen MC, Toews GB, Young VB, Huffnagle GB.  (2012) Appl Environ Microbiol ePub:
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Expression of the blood-group-related glycosyltransferase B4galnt2 influences the intestinal microbiota in mice.  Staubach F, Künzel S, Baines AC, Yee A, McGee BM, Bäckhed F, Baines JF, Johnsen JM. (2012) ISME Journal ePub:
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Comparison between Normalised and Unnormalised 454-Sequencing Libraries for Small-Scale RNA-Seq Studies.  Ekblom R, Slate J, Horsburgh GJ, Birkhead T, Burke T.  (2012) Comp Funct Genomics 2012: 281693.
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Architectural design influences the diversity and structure of the built environment microbiome.  Kembel SW, Jones E, Kline J, Northcutt D, Stenson J, Womack AM, Bohannan BJ, Brown GZ, Green JL.  (2012) ISME Journal ePub:
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SNP Detection from De Novo Transcriptome Sequencing in the Bivalve Macoma balthica: Marker Development for Evolutionary Studies.  Pante E, Rohfritsch A, Becquet V, Belkhir K, Bierne N, Garcia P. (2012) PLoS One 7(12): e52302.
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Bar-Coded Pyrosequencing Reveals the Responses of PBDE-Degrading Microbial Communities to Electron Donor Amendments.  Xu M, Chen X, Qiu M, Zeng X, Xu J, Deng D, Sun G, Li X, Guo J.  (2012) PLoS One 7(1): e30439.
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Milk Microbiome Signatures of Subclinical Mastitis-Affected Cattle Analyzed by Shotgun Sequencing.  Bhatt VD, Ahir VB, Koringa PG, Jakhesara SJ, Rank DN, Nauriyal DS, Kunjadia AP, Joshi CG. (2012) J Appl Microbiol ePub:
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Analysis of Hepatitis C Virus Intra-Host Diversity Across The Coding Region by Ultra-Deep Pyrosequencing.  Lauck M, Alvarado-Mora MV, Becker EA, Bhattacharya D, Striker R, Hughes AL, Carrilho FJ, O'Connor DH, Rebello Pinho JR.  (2012) J Virology ePub:
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Sample richness and genetic diversity as drivers of chimera formation in nSSU metagenetic analyses.  Fonseca VG, Nichols B, Lallias D, Quince C, Carvalho GR, Power DM, Creer S. (2012) Nucleic Acids Research ePub:
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Detection of Base Substitution-Type Somatic Mosaicism of the NLRP3 Gene with >99.9% Statistical Confidence by Massively Parallel Sequencing.  Izawa K, Hijikata A, Tanaka N, Kawai T, Saito MK, Goldbach-Mansky R, Aksentijevich I, Yasumi T, Nakahata T, Heike T, Nishikomori R, Ohara O. (2012) DNA Research ePub:
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Novel Degenerate PCR Method for Whole-Genome Amplification Applied to Peru Margin (ODP Leg 201) Subsurface Samples.  Martino AJ, Rhodes ME, Biddle JF, Brandt LD, Tomsho LP, House CH.  (2012) Front Microbiol 3: 17.
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Pyrosequencing as a tool for better understanding of human microbiomes.  Siqueira JF Jr, Fouad AF, Rôças IN.  (2012) J Oral Microbiol ePub:
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Reassessment of the Listeria monocytogenes pan-genome reveals dynamic integration hotspots and mobile genetic elements as major components of the accessory genome.  Kuenne C, Billion A, Mraheil MA, Strittmatter A, Daniel R, Goesmann A, Barbuddhe S, Hain T, Chakraborty T. (2012) BMC Genomics 14: 47.
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Immune gene mining by pyrosequencing the rockshell, Thais clavigera.  Rhee JS, Kim BM, Horiguchi T, Lee YM, Lee JS.  (2012) Fish Shellfish Immunol ePub:
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High resolution clustering of Salmonella enterica serovar Montevideo strains using a next-generation sequencing approach.  Allard MW, Luo Y, Strain E, Li C, Keys CE, Son I, Stones R, Musser SM, Brown EW. (2012) BMC Genomics 13(1): 32.
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Genomic analysis uncovers a phenotypically diverse but genetically homogeneous Escherichia coli ST131 clone circulating in unrelated urinary tract infections.  Clark G, Paszkiewicz K, Hale J, Weston V, Constantinidou C, Penn C, Achtman M, McNally A.  (2012) J Antimicrob Chemother ePub:
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Microbiome complexity and Staphylococcus aureus in chronic rhinosinusitis.  Feazel LM, Robertson CE, Ramakrishnan VR, Frank DN. (2012) Laryngoscope ePub:
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Ecology of the microbiome of the infected root canal system: a comparison between apical and coronal root segments.  Ozok AR, Persoon IF, Huse SM, Keijser BJ, Wesselink PR, Crielaard W, Zaura E. (2012) Int Endod J ePub:
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Biodiversity in Traditional Polish Cheese Oscypek Determined by Culture-dependent and -independent Approaches.  Alegría A, Szczesny P, Mayo B, Bardowski J, Kowalczyk M. (2012) Appl Environ Microbiol ePub:
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Wide distribution of closely related, antibiotic-producing Arthrobacter strains throughout the Arctic Ocean.  Wietz M, Mĺnsson M, Bowman JS, Blom N, Ng Y, Gram L.  (2012) Appl Environ Microbiol ePub:
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Colonic microbiome is altered in alcoholism.  Mutlu EA, Gillevet PM, Rangwala H, Sikaroodi M, Naqvi A, Engen PA, Kwasny M, Lau CK, Keshavarzian A.  (2012) Am J Physiol Gastrointest Liver Physiol ePub:
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Perturbation dynamics of the rumen microbiota in response to exogenous butyrate.  Li RW, Wu S, Baldwin RL 6th, Li W, Li C.  (2012) PLoS One 7(1): e29392.
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Gene-centric metagenomics analysis of feline intestinal microbiome using 454 junior pyrosequencing.  Tun HM, Brar MS, Khin N, Jun L, Hui RK, Dowd SE, Leung FC.  (2012) J Microbiol Methods ePub:
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A Comprehensive Transcriptome Assembly of Pigeonpea (Cajanus cajan L.) using Sanger and Second-Generation Sequencing Platforms.  Kudapa H, Bharti AK, Cannon SB, Farmer AD, Mulaosmanovic B, Kramer R, Bohra A, Weeks NT, Crow JA, Tuteja R, Shah T, Dutta S, Gupta DK, Singh A, Gaikwad K, Sharma TR, May GD, Singh NK, Varshney RK.  (2012) Mol Plant ePub:
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Host Genotype Shapes the Foliar Fungal Microbiome of Balsam Poplar (Populus balsamifera).  Bálint M, Tiffin P, Hallström B, O'Hara RB, Olson MS, Fankhauser JD, Piepenbring M, Schmitt I. (2012) PLoS One 8(1): e53987.
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Unraveling assembly of stream biofilm communities.  Besemer K, Peter H, Logue JB, Langenheder S, Lindström ES, Tranvik LJ, Battin TJ.  (2012) ISME Journal ePub:
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Changes in Microbiota Population during Fermentation of Narezushi as Revealed by Pyrosequencing Analysis.  Kiyohara M, Koyanagi T, Matsui H, Yamamoto K, Take H, Katsuyama Y, Tsuji A, Miyamae H, Kondo T, Nakamura S, Katayama T, Kumagai H.  (2012) Biosci Biotechnol Biochem ePub:
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The capsicum transcriptome DB: a "hot" tool for genomic research.  Góngora-Castillo E, Fajardo-Jaime R, Fernández-Cortes A, Jofre-Garfias AE, Lozoya-Gloria E, Martínez O, Ochoa-Alejo N, Rivera-Bustamante R.  (2012) Bioinformation 8(1): 43-7.
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Arbuscular mycorrhizal fungi assemblages in Chernozem great groups revealed by massively parallel pyrosequencing.  Dai M, Hamel C, St Arnaud M, He Y, Grant C, Lupwayi N, Janzen H, Malhi SS, Yang X, Zhou Z.  (2012) Can J Microbiol 58(1): 81-92.
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Variations in Helicobacter pylori Cytotoxin-Associated Genes and Their Influence in Progression to Gastric Cancer: Implications for Prevention.  Rizzato C, Torres J, Plummer M, Muńoz N, Franceschi S, Camorlinga-Ponce M, Fuentes-Pananá EM, Canzian F, Kato I.  (2012) PLoS One 7(1): e29605
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Bacterial community analysis during fermentation of ten representative kinds of kimchi with barcoded pyrosequencing.  Park EJ, Chun J, Cha CJ, Park WS, Jeon CO, Bae JW.  (2012) Food Microbiol 30(1): 197-204.
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LTR retrotransposons contribute to genomic gigantism in plethodontid salamanders.  Sun C, Shepard DB, Chong RA, López Arriaza J, Hall K, Castoe TA, Feschotte C, Pollock DD, Mueller RL.  (2012) Genome Biol Evol 4(2): 168-83.
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Draft Genome Sequence of Wickerhamomyces ciferrii NRRL Y-1031 F-60-10.  Schneider J, Andrea H, Blom J, Jaenicke S, Rückert C, Schorsch C, Szczepanowski R, Farwick M, Goesmann A, Pühler A, Schaffer S, Tauch A, Köhler T, Brinkrolf K. (2012) Eukaryote Cell 11(12): 1582-3.
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Ways to mix multiple PCR amplicons into single 454 run for DNA barcoding.  Machida RJ, Knowlton N.  (2012) Metholds Mol Biol 858: 355-61.
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Roche Genome Sequencer FLX Based High-Throughput Sequencing of Ancient DNA.  Alquezar-Planas DE, Fordyce SL.  (2012) Metholds Mol Biol 888: 109-18.
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Preparation of normalized cDNA libraries for 454 titanium transcriptome sequencing.  Lai Z, Zou Y, Kane NC, Choi JH, Wang X, Rieseberg LH.  (2012) Metholds Mol Biol ePub:
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Characterization of squamate olfactory receptor genes and their transcripts by the high-throughput sequencing approach.  Dehara Y, Hashiguchi Y, Matsubara K, Yanai T, Kubo M, Kumazawa Y.  (2012) Genome Biol Evol 4(4): 602-16.
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Bacterial identification and subtyping using DNA microarray and DNA sequencing.  Al-Khaldi SF, Mossoba MM, Allard MM, Lienau EK, Brown ED.  (2012) Metholds Mol Biol 881:: 73-95.
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Microsatellite markers derived from Calophyllum inophyllum (Clusiaceae) expressed sequence tags.  Setsuko S, Uchiyama K, Sugai K, Hanaoka S, Yoshimaru H. (2011) Am J Botany 99(1): e28-32.
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Analysis of the transcriptome of Panax notoginseng root uncovers putative triterpene saponin-biosynthetic genes and genetic markers.  Luo H, Sun C, Sun Y, Wu Q, Li Y, Song J, Niu Y, Cheng X, Xu H, Li C, Liu J, Steinmetz A, Chen S.  (2011) BMC Genomics 12 Suppl 5: S5.
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Microbiomes of ant castes implicate new microbial roles in the fungus-growing ant Trachymyrmex septentrionalis.  Ishak HD, Miller JL, Sen R, Dowd SE, Meyer E, Mueller UG.  (2011) Sci Rep 1: 204.
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Recruitment of members from the rare biosphere of marine bacterioplankton communities after environmental disturbance.  Sjöstedt J, Koch-Schmidt P, Pontarp M, Canbäck B, Tunlid A, Lundberg P, Hagström A, Riemann L.  (2011) Appl Environ Microbiol ePub:
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A Pilot Study for Channel Catfish Whole Genome Sequencing and de novo Assembly.  Jiang Y, Lu J, Peatman E, Kucuktas H, Liu S, Wang S, Sun F, Liu Z. (2011) BMC Genomics 12(1): 629.
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Linking activity, composition and seasonal dynamics of atmospheric methane oxidizers in a meadow soil.  Shrestha PM, Kammann C, Lenhart K, Dam B, Liesack W.  (2011) ISME Journal 6(6): 1115-26.
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A de novo transcriptome of the Asian tiger mosquito, Aedes albopictus, to identify candidate transcripts for diapause preparation.  Poelchau MF, Reynolds JA, Denlinger DL, Elsik CG, Armbruster PA. (2011) BMC Genomics 12(1): 619.
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High-throughput VDJ sequencing for quantification of minimal residual disease in chronic lymphocytic leukemia and immune reconstitution assessment.  Logan AC, Gao H, Wang C, Sahaf B, Jones CD, Marshall EL, Buńo I, Armstrong R, Fire AZ, Weinberg KI, Mindrinos M, Zehnder JL, Boyd SD, Xiao W, Davis RW, Miklos DB.  (2011) PNAS ePub:
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An irritable bowel syndrome subtype defined by species-specific alterations in faecal microbiota.  Jeffery IB, O'Toole PW, Ohman L, Claesson MJ, Deane J, Quigley EM, Simrén M.  (2011) Gut ePub:
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Comparative full genome analysis of four infectious laryngotracheitis virus (Gallid herpesvirus-1) virulent isolates from the United States.  Spatz SJ, Volkening JD, Keeler CL, Kutish GF, Riblet SM, Boettger CM, Clark KF, Zsak L, Afonso CL, Mundt ES, Rock DL, Garcia M.  (2011) Virus Genes ePub:
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Freshwater bacterioplankton richness in oligotrophic lakes depends on nutrient availability rather than on species-area relationships.  Logue JB, Langenheder S, Andersson AF, Bertilsson S, Drakare S, Lanzén A, Lindström ES.  (2011) ISME Journal ePub:
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The Inter-Valley Soil Comparative Survey: the ecology of Dry Valley edaphic microbial communities.  Lee CK, Barbier BA, Bottos EM, McDonald IR, Cary SC. (2011) ISME Journal ePub:
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Distinct and complex bacterial profiles in human periodontitis and health revealed by 16S pyrosequencing.  Griffen AL, Beall CJ, Campbell JH, Firestone ND, Kumar PS, Yang ZK, Podar M, Leys EJ.  (2011) ISME Journal ePub:
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Next generation DNA sequencing technology delivers valuable genetic markers for the genomic orphan legume species, Bituminaria bituminosa.  Pazos-Navarro M, Dabauza M, Correal E, Hanson K, Teakle N, Real D, Nelson MN. (2011) BMC Genetics 12(1): 104.
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Genomic insights to SAR86, an abundant and uncultivated marine bacterial lineage.  Dupont CL, Rusch DB, Yooseph S, Lombardo MJ, Alexander Richter R, Valas R, Novotny M, Yee-Greenbaum J, Selengut JD, Haft DH, Halpern AL, Lasken RS, Nealson K, Friedman R, Craig Venter J. (2011) ISME Journal 6(6): 1186-99.
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