454 Life Sciences

Mitochondrial DNA Variant Discovery and Evaluation in Human Cardiomyopathies through Next-Generation Sequencing.  Zaragoza MV, Fass J, Diegoli M, Lin D, Arbustini E. (8/20/2010) PLoS One 5(8): e12295.
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Isolation of mixed subtypes of influenza A virus from a bald eagle (Haliaeetus leucocephalus).  Goyal SM, Jindal N, Chander Y, Ramakrishnan MA, Redig PT, Sreevatsan S. (7/28/2010) Virology Journal 7: 174.
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Identification of GBV-D, a Novel GB-like Flavivirus from Old World Frugivorous Bats (Pteropus giganteus) in Bangladesh.  Epstein JH, Quan PL, Briese T, Street C, Jabado O, Conlan S, Ali Khan S, Verdugo D, Hossain MJ, Hutchison SK, Egholm M, Luby SP, Daszak P, Lipkin WI. (7/1/2010) PLoS Pathogens 6: e10000972.
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Microbes and Health Sackler Colloquium: Metagenomic detection of phage-encoded platelet-binding factors in the human oral cavity.  Willner D, Furlan M, Schmieder R, Grasis JA, Pride DT, Relman DA, Angly FE, McDole T, Mariella RP Jr, Rohwer F, Haynes M. (6/14/2010) PNAS ePub:
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Viral nucleic acids in live-attenuated vaccines: detection of minority variants and an adventitious virus.  Victoria JG, Wang C, Jones MS, Jaing C, McLoughlin K, Gardner S, Delwart EL. (6/1/2010) Journal of Virology 84(12): 6033-40.
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Astrovirus encephalitis in boy with X-linked agammaglobulinemia.  Quan PL, Wagner TA, Briese T, Torgerson TR, Hornig M, Tashmukhamedova A, Firth C, Palacios G, Baisre-De-Leon A, Paddock CD, Hutchison SK, Egholm M, Zaki SR, Goldman JE, Ochs HD, Lipkin WI. (6/1/2010) Emerg Infect Dis 16(6): 918-25.
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The complete genome sequence of Canna yellow streak virus.  Monger WA, Adams IP, Glover RH, Barrett B. (5/22/2010) Arch Virol ePub:
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Complete mitochondrial genome phylogeographic analysis of killer whales (Orcinus orca) indicates multiple species.  Morin PA, Archer FI, Foote AD, Vilstrup J, Allen EE, Wade P, Durban J, Parsons K, Pitman R, Li L, Bouffard P, Abel Nielsen SC, Rasmussen M, Willerslev E, Gilbert MT, Harkins T. (4/22/2010) Genome Research 20(7): 908-16.
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mRNA deep sequencing reveals 75 new genes and a complex transcriptional landscape in Mimivirus.  Legendre M, Audic S, Poirot O, Hingamp P, Seltzer V, Byrne D, Lartigue A, Lescot M, Bernadac A, Poulain J, Abergel C, Claverie JM. (4/1/2010) Genome Research 20(5): 664-74.
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Structural and functional analysis of viral siRNAs.  Szittya G, Moxon S, Pantaleo V, Toth G, Rusholme Pilcher RL, Moulton V, Burgyan J, Dalmay T. (4/1/2010) PLoS Pathogens 6(4): e1000838.
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Complete sequence of the mitochondrial genome of a diatom alga Synedra acus and comparative analysis of diatom mitochondrial genomes.  Ravin NV, Galachyants YP, Mardanov AV, Beletsky AV, Petrova DP, Sherbakova TA, Zakharova YR, Likhoshway YV, Skryabin KG, Grachev MA. (3/23/2010) Current Genetics 56(3): 215-23.
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Massively parallel sequencing, a new method for detecting adventitious agents.  Onions D, Kolman J. (3/23/2010) Biologicals 38(3): 377-80.
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Rapid interactome profiling by massive sequencing.  Di Niro R, Sulic AM, Mignone F, D'Angelo S, Bordoni R, Iacono M, Marzari R, Gaiotto T, Lavric M, Bradbury AR, Biancone L, Zevin-Sonkin D, De Bellis G, Santoro C, Sblattero D. (2/9/2010) Nucleic Acids Research 38(9): e110.
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Analysis of High-Throughput Sequencing and Annotation Strategies for Phage Genomes.  Henn MR, Sullivan MB, Stange-Thomann N, Osburne MS, Berlin AM, Kelly L, Yandava C, Kodira C, Zeng Q, Weiand M, Sparrow T, Saif S, Giannoukos G, Young SK, Nusbaum C, Birren BW, Chisholm SW. (2/5/2010) PLoS One 5(2): e9083.
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Evolution at a High Imposed Mutation Rate: Adaptation Obscures the Load in Phage T7.  Springman R, Keller T, Molineux I, Bull JJ. (1/1/2010) Genetics 184(1): 221-32.
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Next-generation phage display: integrating and comparing available molecular tools to enable cost-effective high-throughput analysis.  Dias-Neto E, Nunes DN, Giordano RJ, Sun J, Botz GH, Yang K, Setubal JC, Pasqualini R, Arap W. (12/17/2009) PLoS One 4(12): e8338.
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Giant Marseillevirus highlights the role of amoebae as a melting pot in emergence of chimeric microorganisms.  Mickaël Boyera, Natalya Yutinb, Isabelle Pagniera, Lina Barrassia, Ghislain Fournousa, Leon Espinosaa, Catherine Roberta, Saïd Azzaa, Siyang Sunc, Michael G. Rossmannc, Marie Suzan-Montia, Bernard La Scolaa, Eugene V. Kooninb and Didier Raoulta (12/9/2009) PNAS 106(51): 21848-53.
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Deep-sequencing of plant viral small RNAs reveals effective and widespread targeting of viral genomes.  Donaire L, Wang Y, Gonzalez-Ibeas D, Mayer KF, Aranda MA, Llave C. (8/6/2009) Virology 392(2): 203-14.
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Experimental induction of proventricular dilatation disease in cockatiels (Nymphicus hollandicus) inoculated with brain homogenates containing avian bornavirus 4.  Gancz AY, Kistler AL, Greninger AL, Farnoushi Y, Mechani S, Perl S, Berkowitz A, Perez N, Clubb S, Derisi JL, Ganem D, Lublin A. (7/10/2009) Journal of Virology 6(1): 100.
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The complete genome of klassevirus- a novel picornavirus in pediatric stool.  Greninger AL, Runckel C, Chiu CY, Haggerty T, Parsonnet J, Ganem D, DeRisi JL (6/18/2009) Virology Journal 6: 79.
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Complete sequence determination of a novel reptile iridovirus isolated from soft-shelled turtle and evolutionary analysis of Iridoviridae.  Huang Y, Huang X, Hong L, Gong J, Ouyang Z, Cui H, Cao J, Zhao Y, Wang X, Jiang Y, Qin Q. (5/14/2009) BMC Genomics 10: 224.
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Phylogenetic analysis of three genes of Penguinpox virus corresponding to Vaccinia virus G8R (VLTF-1), A3L (P4b) and H3L reveals that it is most closely related to Turkeypox virus, Ostrichpox virus and Pigeonpox virus.  Carulei O, Douglass N, Williamson AL. (5/8/2009) Virology Journal 6: 52.
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Ultra-Deep Pyrosequencing of Hepatitis B Virus Quasispecies from Nucleoside and Nucleotide Reverse-Transcriptase Inhibitor (NRTI)-Treated Patients and NRTI-Naive Patients.  Margeridon-Thermet S, Shulman NS, Ahmed A, Shahriar R, Liu T, Wang C, Holmes SP, Babrzadeh F, Gharizadeh B, Hanczaruk B, Simen BB, Egholm M, Shafer RW. (5/1/2009) Journal of Infectious Disease 199(9): 1275-85.
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The polyadenylation site of Mimivirus transcripts obeys a stringent "hairpin rule".  Byrne D, Grzela R, Lartigue A, Audic S, Chenivesse S, Encinas S, Claverie JM, Abergel C. (4/29/2009) Genome Research 19(7): 1233-42.
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The mitochondrial genome sequence of the arbuscular mycorrhizal fungus Glomus intraradices isolate 494 and implications for the phylogenetic placement of Glomus.  Lee J, Young JP. (4/7/2009) New Phytol 183(1): 200-11
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Improved strategies for sequence-independent amplification and sequencing of viral double-stranded RNA genomes.  Potgieter AC, Page NA, Liebenberg J, Wright IM, Landt O, van Dijk AA. (3/4/2009) J Gen Virology 90(Pt 6): 1423-32.
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Purification of DNA from the cell-associated herpesvirus Marek's disease virus for 454 pyrosequencing using micrococcal nuclease digestion and polyethylene glycol precipitation.  Volkening JD, Spatz SJ. (3/1/2009) Journal of Virology Methods 157(1): 55-61
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Simple, sensitive, and swift sequencing of complete Avian Influenza H5N1 genomes.  D. Hoper, B. Hoffmann, and M. Beer (3/1/2009) Journal of Clinical Microbiology 47(3): 674-9
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The complete mitochondrial genome of the large yellow croaker, Larimichthys crocea (Perciformes, Sciaenidae): Unusual features of its control region and the phylogenetic position of the Sciaenidae.  Cui Z, Liu Y, Li CP, You F, Chu KH. (3/1/2009) Gene 432(1-2): 33-43
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The mitochondrial genomes of Ancylostoma caninum and Bunostomum phlebotomum--two hookworms of animal health and zoonotic importance.  Jex AR, Waeschenbach A, Hu M, van Wyk JA, Beveridge I, Littlewood DT, Gasser RB. (2/11/2009) BMC Genomics 10: 79.
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Phage therapy of coral white plague disease: properties of phage BA3.  Efrony R, Atad I, Rosenberg E. (2/1/2009) Current Microbiology 58(2): 139-45.
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Use of massively parallel ultradeep pyrosequencing to characterize the genetic diversity of hepatitis B virus in drug-resistant and drug-naive patients and to detect minor variants in reverse transcriptase and hepatitis B S antigen.  Solmone M, Vincenti D, Prosperi MC, Bruselles A, Ippolito G, Capobianchi MR. (2/1/2009) Journal of Virology 83(4): 1718-26
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Novel virus discovery in field-collected mosquito larvae using an improved system for rapid determination of viral RNA sequences (RDV ver4.0).  Yamao et al. (1/1/2009) Archives of Virology 154(1): 153-8
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Newly discovered ebola virus associated with hemorrhagic fever outbreak in Uganda.  Towner JS, Sealy TK, Khristova ML, Albariño CG, Conlan S, Reeder SA, Quan PL, Lipkin WI, Downing R, Tappero JW, Okware S, Lutwama J, Bakamutumaho B, Kayiwa J, Comer JA, Rollin PE, Ksiazek TG, Nichol ST. (11/21/2008) PLoS Pathogens 4: e1000212
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Molecular characterization of a variant of Bacillus anthracis-specific phage AP50 with improved bacteriolytic activity.  Sozhamannan S, McKinstry M, Lentz SM, Jalasvuori M, McAfee F, Smith A, Dabbs J, Ackermann HW, Bamford JK, Mateczun A, Read TD. (11/1/2008) Applied Environmental Microbiology 74(21): 6792-6.
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The genome and proteome of the Kluyvera bacteriophage Kvp1--another member of the T7-like Autographivirinae.  Lingohr EJ, Villegas A, She YM, Ceyssens PJ, Kropinski AM. (10/20/2008) Virology Journal 5: 122
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The virophage as a unique parasite of the giant mimivirus.  La Scola B, Desnues C, Pagnier I, Robert C, Barrassi L, Fournous G, Merchat M, Suzan-Monti M, Forterre P, Koonin E, Raoult D. (9/4/2008) Nature 455: 100-4
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Sequence analysis of a non-classified, non-occluded DNA virus that causes salivary gland hypertrophy of Musca domestica, MdSGHV  Garcia-Maruniak A, Maruniak JE, Farmerie W, Boucias DG (7/20/2008) Virology 377: 184-196
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Laboratory strains of murine cytomegalovirus are genetically similar to but phenotypically distinct from wild strains of virus.  Smith LM, McWhorter AR, Masters LL, Shellam GR, Redwood AJ. (7/1/2008) Journal of Virology 82: 6689-6696
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Sequence determination of a mildly virulent strain (CU-2) of Gallid herpesvirus type 2 using 454 pyrosequencing  Stephen J. Spatz, Cary A. Rue (6/1/2008) Virus Genes 36: 479-489
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Genome analysis of a Glossina pallidipes salivary gland hypertrophy virus reveals a novel, large, double-stranded circular DNA virus  Abd-Alla AM, Cousserans F, Parker AG, Jehle JA, Parker NJ, Vlak JM, Robinson AS, Bergoin M (5/1/2008) J Virology 82: 4595-4611
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Chromatophore Genome Sequence of Paulinella Sheds Light on Acquisition of Photosynthesis by Eukaryotes  Eva C.M. Nowack, Michael Melkonian, Gernot Glöckner (3/25/2008) Current Biology 18: 410-418
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Using 454 technology for long-PCR based sequencing of the complete mitochondrial genome from single Haemonchus contortus (Nematoda)  Aaron R Jex, Min Hu, D Timothy J Littlewood, Andrea Waeschenbach and Robin B Gasser (1/11/2008) BMC Genomics 9:
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Identification of novel antipoxviral agents: Mitoxantrone inhibits vaccinia virus replication by blocking virion assembly  Deng L, Dai P, Ciro A, Smee DF, Djaballah H, Shuman S (10/10/2007) Journal of Virology :
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Genome analysis of phage JS98 defines a fourth major subgroup of T4-like phages in Escherichia coli  Zuber S, Ngom-Bru C, Barretto C, Bruttin A, Bruessow H, Denou E (8/10/2007) Journal of Bacteriology :
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Targeted high-throughput sequencing of tagged nucleic acid samples  Meyer M, Stenzel U, Myles S, Prüfer K, Hofreiter M (8/1/2007) Nucleic Acids Research 35:
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Complete plastid genome sequences of Drimys, Liriodendron, and Piper: implications for the phylogenetic relationships of magnoliids  Zhengqiu Cai, Cynthia Penaflor, Jennifer V Kuehl, James Leebens-Mack, John E Carlson, Claude W dePamphilis, Jeffrey L Boore and Robert K Jansen (10/4/2006) BMC Evolutionary Biology 6:
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Rapid and accurate pyrosequencing of angiosperm plastid genomes   Michael J. Moore1, Amit Dhingra , Pamela S. Soltis, Regina Shaw, William G. Farmerie, Kevin M. Folta, and Douglas E. Soltis (8/25/2006) BMC Plant Biology 6:
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